Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1520 ATGGCAACGAATGTGGGGATTCTCGCTATTGACATCTACTTCCCTTCCACCTGTGTTCAACAGGAAGCACTGGAGGAGCATGATGGTGCCAGTAAAGGCAAGTATACTATTGGACTTGGACAAGAATGCATGGCATTTTGTACTGATTTGGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCCCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATTGGTCGTCTAGAAGTGGGAAGTGAGACTGTGATAGACAAAAGCAAGTCCATCAAGACTTTCCTGATGCAGATCTTTGAGAAGCATGGAAATACTGATATCGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGCACGGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCCTGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGTCCTGCTAGGCCTACTGGCGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAACTGAGAGCAAGTCATATGTCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGGAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAAACATCTCAGTCACAAATATGAGAAACTCAATGGAAAGCAGTTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTGCAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAATAATCCCAGTTCTGTGGATGAGGTTGCCAAAGAAAAGTTGGAACCTTTTGCGCAATTATCTGGTGATGAGAGCTATCAAAGCCGGGATCTGGAAAAGGCATCCCAGCAAGTAGCAAAAGCTCAATATGATGAAAAGGTGCAACCAACCACTTTGGTACCAAAACAAGTTGGCAACATGTACACTGCATCACTTTATGCAGCTTTTATTTCACTTATTCACAACAAATATAACACATTGGCAGGTAAAAGGGTGATGTTATTCTCTTATGGAAGTGGCTTAACTTCCACAATGTTCTCTTTGCAATTACGTGATGGTCAACATCCATTTAGCTTGTCTAACATTTCTGAAGTGATGGATGTTGCTGGAAAATTGAAGTCCAGGCATGAGTTTCCTCCAGAGAAATTTGTTGAAATCATGAAGTTAATGGAACATAGGTATGGTGCAAAGGAGTTTGTAACAAGCAAGGAGACTAGCCTTTTACCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATGCAAAGAAAGCTAGTGAAAGTGGTTTGACTCATGCAGAAAACGGTTCAATATCCAATGGTCACTGA 1404 0.4167 MATNVGILAIDIYFPSTCVQQEALEEHDGASKGKYTIGLGQECMAFCTDLEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRASHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLSHKYEKLNGKQFSLSDAEYFVFHSPYNKLVQKSFARLVFNDFLNNPSSVDEVAKEKLEPFAQLSGDESYQSRDLEKASQQVAKAQYDEKVQPTTLVPKQVGNMYTASLYAAFISLIHNKYNTLAGKRVMLFSYGSGLTSTMFSLQLRDGQHPFSLSNISEVMDVAGKLKSRHEFPPEKFVEIMKLMEHRYGAKEFVTSKETSLLPPGTFYLTEVDSMYRRFYAKKASESGLTHAENGSISNGH* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1520 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Apr10g1520 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 174 IPR013528 -
Apr10g1520 467 CDD init_cond_enzymes 4 368 - -
Apr10g1520 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Apr10g1520 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Apr10g1520 467 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Apr10g1520 467 Gene3D - 1 450 IPR016039 GO:0016746
Apr10g1520 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Apr10g1520 467 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1520 Apr-Chr10 27662305 27667752 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1520 K01641 - gmx:100780554 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1520 10 27662305 27667752 Apr10g1520 10 27662305 27667752 ECH
Apr10g1520 10 27662305 27667752 Apr7g0627 7 12932322 12938005 PCT