Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0606 ATGGCCTCGAAAACCCTCTCCATCTTCCTTCTCATCGCCATAAGCTGCATCGCTGCAACACGAGCAGCGACTTTCAACATAACAAACCGATGCAACTACACGGTGTGGGCGGCAGCCATGCCCGGCGGCGGCGTAAGGCTTAACTCCGGCGAATCATGGAGCCTCAACGTGACGAACGGTACCACTGGAGGACGCATTTGGGGTCGAACAAACTGCACTTTCGACAACGCTGGACGCGGCACGTGCCAGACGGGTGACTGTGAGGGTGTCCTGGAGTGCAAATCATACGGTAAAGCCCCAAACACACTGGTCGAATTCGCGTTGAACCAATACAACAACCTCGACTTCTACGATATCTCACTCGTCGACGGTTTTAACATTCCCGTTCAAATAAGCCCGACATATAACTGCAGTTCCGTTAAATGCGCCACCGACATGAACGAAGAGTGCCCCACGCAGCTTAAGGTTCCAGGCGGTTGCAACAGCGCGTGCAATGCGTTCAATACCACTCAATACTGTTGCACCGGTGCTTCTAGATGCGGTCCAACTACTTATTCAAGATTCTTCAAGGATAAGTGCCCAGATGCATACAGTTATCCTATGGATGATGCTACCAGCACGTTCACATGCCAAGGAGGAACCGACTATAGGGTTGAATTTTCAGCAAACTTCGAAATCGTCAACAACTGCCCTTACACGGTGTGGGCCGCCGCCAGCCCCGGCGGTGGTCGGCGCCTCGACCGCGGCCAAAGTTGGAACCTCTGGGTTGCAGCAGGCACCACGATGGCTCGCATTTGGGGTCGCACCGGTTGCAACTTCGACGCCAGTGGTCACGGGCGTTGCCAAACCGGTGACTGCACGGGTGGACTCCAATGCACGGGTTGGGGTGTCCCTCCAAACACGCTGGCTGAGTTCGCGTTGAACCAATTCGCGAATCAGGATTTCTATGATATTTCTCTTGTTGATGGGTTCAACATTCCTATGGACTTTTACCCTCTGAACGGTGGCTGTCACAAAATTAGTTGCACAGCTGATATTAATGGACAGTGTCCGGGCGTTTTGCGAGCCTCGGGTGGGTGTAATAATCCTTGTACTGTGTTTAAGACCAATCAGTATTGCTGCACCGATGGACCTGGGAGCTGTGGGCCCACTGACTACTCAAAGTTTTTCAAAGATAGGTGCCATGATGCTTATAGCTACCCTCAGGATGACCCAACGAGCACTTTCACTTGCCCTGCTGGCTCTAACTATAGGGTTGTCTTCTGTCCACTGGGAGAACCTCATGTGCCCCTTCTCATGCCTGCTACTACCCACAACCAGTATTGA 1326 0.5264 MASKTLSIFLLIAISCIAATRAATFNITNRCNYTVWAAAMPGGGVRLNSGESWSLNVTNGTTGGRIWGRTNCTFDNAGRGTCQTGDCEGVLECKSYGKAPNTLVEFALNQYNNLDFYDISLVDGFNIPVQISPTYNCSSVKCATDMNEECPTQLKVPGGCNSACNAFNTTQYCCTGASRCGPTTYSRFFKDKCPDAYSYPMDDATSTFTCQGGTDYRVEFSANFEIVNNCPYTVWAAASPGGGRRLDRGQSWNLWVAAGTTMARIWGRTGCNFDASGHGRCQTGDCTGGLQCTGWGVPPNTLAEFALNQFANQDFYDISLVDGFNIPMDFYPLNGGCHKISCTADINGQCPGVLRASGGCNNPCTVFKTNQYCCTDGPGSCGPTDYSKFFKDRCHDAYSYPQDDPTSTFTCPAGSNYRVVFCPLGEPHVPLLMPATTHNQY* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0606 441 ProSitePatterns Thaumatin family signature. 277 292 IPR017949 -
Apr7g0606 441 SUPERFAMILY Osmotin, thaumatin-like protein 22 220 IPR037176 -
Apr7g0606 441 PANTHER OS03G0233200 PROTEIN 3 220 IPR001938 -
Apr7g0606 441 PANTHER OS03G0233200 PROTEIN 221 423 IPR001938 -
Apr7g0606 441 Pfam Thaumatin family 29 221 IPR001938 -
Apr7g0606 441 Pfam Thaumatin family 228 423 IPR001938 -
Apr7g0606 441 ProSiteProfiles Thaumatin family profile. 221 423 IPR001938 -
Apr7g0606 441 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Apr7g0606 441 Gene3D Thaumatin 22 222 IPR037176 -
Apr7g0606 441 Gene3D Thaumatin 223 424 IPR037176 -
Apr7g0606 441 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Apr7g0606 441 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 3 220 - -
Apr7g0606 441 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 221 423 - -
Apr7g0606 441 CDD TLP-P 224 423 - -
Apr7g0606 441 SUPERFAMILY Osmotin, thaumatin-like protein 223 423 IPR037176 -
Apr7g0606 441 PRINTS Pathogenesis-related protein signature 223 235 IPR001938 -
Apr7g0606 441 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Apr7g0606 441 PRINTS Pathogenesis-related protein signature 264 275 IPR001938 -
Apr7g0606 441 PRINTS Pathogenesis-related protein signature 277 306 IPR001938 -
Apr7g0606 441 PRINTS Pathogenesis-related protein signature 314 330 IPR001938 -
Apr7g0606 441 PRINTS Pathogenesis-related protein signature 413 422 IPR001938 -
Apr7g0606 441 SMART tha2 224 423 IPR001938 -
Apr7g0606 441 SMART tha2 25 222 IPR001938 -
Apr7g0606 441 ProSiteProfiles Thaumatin family profile. 22 220 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0606 Apr-Chr7 12649256 12652694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0606 220 423 Receptor kinase-like Gene Family AT5G38280 37.118 1.40e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0606 - - aprc:113868881 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0606 7 12649256 12652694 Apr7g0606 7 12649256 12652694 ECH
Apr7g0606 7 12649256 12652694 Apr2g1170 2 17966236 17966901 PCT