Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1170 ATGACTCTCACAAAAGCCCTCTTCTTTCTAATCGCTCTATGCTTCACCTCTACACAAGCAGCACGGTTTGACATCATAAACCGATGCCGGTACACCGTATGGGCCGCGGCTGTGCCTGGTGGTGGGAGAAGGCTCGACTCGGGCCAGTCCTGGGCCCTGGACGTGGCAGCAGGAACGAAAGGGGCCCGCATTTGGGCCCGAACGGGGTGCAACTTCGACGGTTCGGGCCGCGGTAAATGCCAAACGGGTGACTGCGGCGGCGTCCGAGAGTGCACTGCGTACGGTGCACCTCCCAACACCTTAGCGGAATACGCACTGAACCAATTTAACAACTTGGACTTCTTCGATATCTCTCTTGTTGACGGTTTCAACGTTCCCATGGACTTTAGCCCCACGTCGAACGGGTGCACCCGTGGCATAAGATGCACTGCTGACATTAACGGACAGTGCCCTAGTCAGCTTAAGACTCAAGGTGGTTGCAACAACCCATGTACTGTGTTCAAAACTAACCAGTATTGTTGTAATTCTGGTAGCTGTGGCCCCACTACTTATTCCAAATTCTTCAAAGATAGGTGCCCCGATGCTTATAGTTACCCCAAGGATGATCAAACCAGCACGTTTACTTGCAAGGGTGGAACTAACTATAGGGTTGTCTTTTGCCCTTGA 666 0.5255 MTLTKALFFLIALCFTSTQAARFDIINRCRYTVWAAAVPGGGRRLDSGQSWALDVAAGTKGARIWARTGCNFDGSGRGKCQTGDCGGVRECTAYGAPPNTLAEYALNQFNNLDFFDISLVDGFNVPMDFSPTSNGCTRGIRCTADINGQCPSQLKTQGGCNNPCTVFKTNQYCCNSGSCGPTTYSKFFKDRCPDAYSYPKDDQTSTFTCKGGTNYRVVFCP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1170 221 ProSiteProfiles Thaumatin family profile. 20 221 IPR001938 -
Apr2g1170 221 PANTHER OS03G0233200 PROTEIN 6 221 IPR001938 -
Apr2g1170 221 Gene3D Thaumatin 21 221 IPR037176 -
Apr2g1170 221 CDD TLP-P 23 221 - -
Apr2g1170 221 ProSitePatterns Thaumatin family signature. 76 91 IPR017949 -
Apr2g1170 221 PANTHER THAUMATIN-RELATED 6 221 - -
Apr2g1170 221 SUPERFAMILY Osmotin, thaumatin-like protein 21 221 IPR037176 -
Apr2g1170 221 PIRSF PR5 1 221 IPR001938 -
Apr2g1170 221 Pfam Thaumatin family 27 221 IPR001938 -
Apr2g1170 221 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Apr2g1170 221 PRINTS Pathogenesis-related protein signature 41 50 IPR001938 -
Apr2g1170 221 PRINTS Pathogenesis-related protein signature 63 74 IPR001938 -
Apr2g1170 221 PRINTS Pathogenesis-related protein signature 76 105 IPR001938 -
Apr2g1170 221 PRINTS Pathogenesis-related protein signature 113 129 IPR001938 -
Apr2g1170 221 PRINTS Pathogenesis-related protein signature 211 220 IPR001938 -
Apr2g1170 221 SMART tha2 23 221 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1170 Apr-Chr2 17966236 17966901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1170 7 221 Receptor kinase-like Gene Family AT5G38280 37.190 5.26e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1170 - - gmx:100301882 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1170 2 17966236 17966901 Apr2g1170 2 17966236 17966901 ECH
Apr7g0606 7 12649256 12652694 Apr2g1170 2 17966236 17966901 PCT