Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0520 ATGGCATCGCGCGTCAGCATCAACAACTTCACCTCTTCCGCGCCCTATATCAATTCCCCTCACTTTCTGTCACCTGTTAACACTTCTAATCACTCCCTCCAGAACGGTTCGCAAAAGGTCATGCTTCAGAAAAACGTTCTCGTTACCGGTGGCGCCGGTTACATCGGTAGCCACGCCGTTCTTCAGCTCTTGCTCGGAGGTTTTAGGACAGTTGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCATCCGCAGAGTTAAGGAGCTCGCCGGGGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTCCGGGACAGAGCTGCACTAGAGCAAATATTTGTTTCCACACAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGGGAGAGTGTGCAAAAACCGTTACTATACTACAACAACAACTTGATTGGGACAATCACTCTGTTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACCGTATATGGTTGGCCGAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATACGGGCGAACTAAGCTTATCATTGAAGAAATTTGTGGTGATGTCCAACTTGCAGAGCCAGATTGGAAAATAATATTGTTGAGATACTTCAACCCAGTTGGTGCACACCCTAGCGGTTATATTGGGGAGGATCCTCGTGGAATTCCGAACAATCTTATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGACCTGCACTGACAGTTTTTGGAAATGATTATAATACAGTTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGGTTGTGAGGTTTACAACCTGGGAACAGGAAAGGGAACATCTGTTTTAGAGATGGTTAAAGCTTTTGAAAAGGCATCTGGAAAGACAATTCCACTTATGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTGTATGCATCAACAAAGAAAGCAGAAAGAGAGCTTAAATGGAAGGCAAAATTTGGCATTGATGAGATGTGTCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAAGACTCCACCGATTAA 1170 0.4564 MASRVSINNFTSSAPYINSPHFLSPVNTSNHSLQNGSQKVMLQKNVLVTGGAGYIGSHAVLQLLLGGFRTVVVDNLDNSSEVAIRRVKELAGEFGNNLSFHKVDLRDRAALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICGDVQLAEPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVKAFEKASGKTIPLMMAGRRPGDAEIVYASTKKAERELKWKAKFGIDEMCRDQWNWASKNPYGYGDQDSTD* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0520 389 Pfam GDP-mannose 4,6 dehydratase 47 370 IPR016040 -
Apr7g0520 389 TIGRFAM galE: UDP-glucose 4-epimerase GalE 45 380 IPR005886 GO:0003978|GO:0006012
Apr7g0520 389 CDD UDP_G4E_1_SDR_e 45 374 IPR005886 GO:0003978|GO:0006012
Apr7g0520 389 PRINTS Nucleotide sugar epimerase signature 72 88 - -
Apr7g0520 389 PRINTS Nucleotide sugar epimerase signature 276 291 - -
Apr7g0520 389 PRINTS Nucleotide sugar epimerase signature 302 317 - -
Apr7g0520 389 PRINTS Nucleotide sugar epimerase signature 341 358 - -
Apr7g0520 389 PANTHER UDP-GLUCOSE 4-EPIMERASE 41 385 - -
Apr7g0520 389 Gene3D - 234 375 - -
Apr7g0520 389 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 41 385 - -
Apr7g0520 389 Gene3D - 46 315 - -
Apr7g0520 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 382 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0520 Apr-Chr7 11623737 11628196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0520 45 359 Miscellaneous Gene Families AT4G00110 27.327 2.00e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0520 K01784 - gmx:100818509 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0520 7 11623737 11628196 Apr7g0520 7 11623737 11628196 ECH
Apr7g0520 7 11623737 11628196 Apr2g1279 2 19040358 19044266 PCT