Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1279 ATGCCAACCCAAACCGTTCTCGTCACCGGCGGAGCCGGTTACATCGGTAGTCACACCGTTCTTCAGCTTCTGCTCGGCGGTTTCAAGGCCGTCGTCGTCGACAACCTCGACAATTCTTCCGAAGCCTCCATCCAAAGAGTCCAAAAACTCGCCGGAGAATTCGCCGACAACCTTTCCTATCACAAGTTAGACCTCCGAGACAGAGATGGACTAGAGAAAATATTCTCTTCCACAAAGTTTGATTCTGTCATACATTTTGCTGGACTAAAAGCAGTAGGTGAAAGTGTGCAGAAACCATTACTCTACTTTGACAACAACCTGATTGGGACAATCGTTCTCCTTGAAGTCATGGCTGCCCACGGATGCAGGAAGCTTGTGTTTTCATCTTCAGCCACTGTCTATGGCTGGCCAAAGGAGGTTCCATGTACTGAAGAGTTCCCTTTGTCAGCAGCAAACCCATACGGACGAACCAAGCTTATGATCGAAGAAATTTGCCATGATATCTACCGTGCAGATTCAGAATGGAAAATAATACTGTTGAGGTACTTCAACCCAGTTGGTGCACATCCTAGTGGTTACATTGGTGAGGATCCTCGTGGAATTCCAAATAACCTCATGCCCTTTGTTCAGCAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGTGATTATAAAACAAATGATGGCACTGGAGTTCGTGACTACATTCATGTTGTTGACTTAGCAGATGGGCATATTGCTGCATTGCGTAAACTGGAAGATACTAAAATAGGTTGTAAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTACTGGAGATGGTTAAAGCTTTCGAACAAGCCTCTGGAAAGAAAATTCCACTTGTAATGGCTAATCGGAGACCTGGAGATGCTGAAGTTGTCTATGCATCAACAGCGAAAGCAGAAACAGAACTTAAATGGAAAGCCAAATATGGCATTGATGAGATGTGCCGCGATCAATGGAATTGGGCCAGCAAAAACCCTTATGGCTATGGTGGATCTGAAGATTCTTCTTAG 1050 0.4514 MPTQTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSEASIQRVQKLAGEFADNLSYHKLDLRDRDGLEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYFDNNLIGTIVLLEVMAAHGCRKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLMIEEICHDIYRADSEWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGSDYKTNDGTGVRDYIHVVDLADGHIAALRKLEDTKIGCKVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMANRRPGDAEVVYASTAKAETELKWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1279 349 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Apr2g1279 349 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Apr2g1279 349 PRINTS Nucleotide sugar epimerase signature 236 251 - -
Apr2g1279 349 PRINTS Nucleotide sugar epimerase signature 262 277 - -
Apr2g1279 349 PRINTS Nucleotide sugar epimerase signature 301 318 - -
Apr2g1279 349 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 1 346 - -
Apr2g1279 349 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Apr2g1279 349 Gene3D - 194 335 - -
Apr2g1279 349 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 346 - -
Apr2g1279 349 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
Apr2g1279 349 Gene3D - 6 275 - -
Apr2g1279 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 341 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1279 Apr-Chr2 19040358 19044266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1279 5 319 Miscellaneous Gene Families AT4G00110 28.354 1.94e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1279 K01784 - gmx:100812565 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1279 2 19040358 19044266 Apr2g1279 2 19040358 19044266 ECH
Apr7g0520 7 11623737 11628196 Apr2g1279 2 19040358 19044266 PCT