Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1390 ATGGGGGCGAACCGGAGAAGAGAGAACCGTGGGGAACCGGTGACGATGGATCACGTGTTGTTGGCGTCACAAGAGAGCAAGGAAGAGAGGGAAACGAGGATTCGTAGTCTTTTTGGTTTCTTTGATAAGGAAAGTTGCGGTTACTTGGATTACGCTTTAATTGAGGCTGGGCTTTCGGCGCTGCAAATACCCTCCGAGTATAAGTACGCCAAGGACTTGTTCAACGCTTGCGATGCGAACAAGGATGGGAAAGTTGATTATGAAGAGTTCAAGAGGTACATGGACGATAAGGAACTCGAGTTGTATCGAATTTTTCAAGCCATTGATGTTGAGCATAGTGGGAGTATTTTGCCTGAAGAGCTTTGGGAAGCGCTTGTCAGAGCAGGGATTCAGATTGATGATGAGGAACTTGCCCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGGGTTATAACATTTGGGGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCGACTATTGAGAACATTTACCATTACCTGGAGCGGGTATGCCTGGTGGATATTGGGGAACAGACTGTTATTCCAGCAGGCATTAGTAAGCACATCCATGCAAGTAGCTATCTGATTGCAGGAGGGGTAGCAGGTGCTGCATCCCGAACAACAACTGCACCCCTTGATCGTTTAAAGGTTGTATTGCAGGTCCAAACAGCACGAGCTCATATAATGCCTGCAATAAAAGATATATGGAAAGAAGGTGGCTTGCTAGGATTTTATCGAGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCTATTAGATTTTACACCTATGAGAAGTTGAAGACCTTCATTATGAATGCTAAAGGAGAAGAGTCAAAGGCTGATATTGGAACTATGGGACGGCTGCTAGCTGGTGGTATAGCTGGTGCTGTAGCTCAAACTGCAATATATCCTCTGGATCTTGTTAAAACACGGATACAAACTTATGCTTGTAAAGGTGGAAGTGTTCCCAGTCTTGGAACCCTCTCAAAAGATATCTTGGTTCAGGAAGGACCCCGTGCATTTTATAAGGGCTTGATTCCTTCTGTTCTGGGGATTATACCATATGCTGGCATAGATCTTGCTGCATATGAAACATTGAAAGATATGTCAAAGAAATATATTCTTCATGATGAAGAACCTGGTCCTCTTGTACAATTAGGATGTGGGACAGTGTCAGGTGCCCTTGGAGCAACCTGTGTTTACCCTTTGCAGGTTGTGAGAACGAGAATGCAGGCTCAACGTGCTTATATGGGAATGACCGATATATTCAGGAGAACCTTTGAACATGAAGGGTTTAGGGGTTTCTACAAAGGACTATTTCCTAACCTGCTCAAAGTTGTTCCATCTGCTAGTATCACTTATTTGGTATATGAGAGTATGAAAAAGGGATTGGAGTTGGAGTGA 1443 0.4414 MGANRRRENRGEPVTMDHVLLASQESKEERETRIRSLFGFFDKESCGYLDYALIEAGLSALQIPSEYKYAKDLFNACDANKDGKVDYEEFKRYMDDKELELYRIFQAIDVEHSGSILPEELWEALVRAGIQIDDEELARFVERVDKDNNGVITFGEWRDFLLLYPHEATIENIYHYLERVCLVDIGEQTVIPAGISKHIHASSYLIAGGVAGAASRTTTAPLDRLKVVLQVQTARAHIMPAIKDIWKEGGLLGFYRGNGLNVLKVAPESAIRFYTYEKLKTFIMNAKGEESKADIGTMGRLLAGGIAGAVAQTAIYPLDLVKTRIQTYACKGGSVPSLGTLSKDILVQEGPRAFYKGLIPSVLGIIPYAGIDLAAYETLKDMSKKYILHDEEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRAYMGMTDIFRRTFEHEGFRGFYKGLFPNLLKVVPSASITYLVYESMKKGLELE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1390 480 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Apr6g1390 480 PANTHER SOLUTE CARRIER FAMILY 25 47 477 - -
Apr6g1390 480 Pfam EF-hand domain pair 100 156 IPR002048 GO:0005509
Apr6g1390 480 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 282 IPR018108 -
Apr6g1390 480 ProSitePatterns EF-hand calcium-binding domain. 145 157 IPR018247 -
Apr6g1390 480 ProSiteProfiles EF-hand calcium-binding domain profile. 132 167 IPR002048 GO:0005509
Apr6g1390 480 Pfam EF hand 71 94 IPR002048 GO:0005509
Apr6g1390 480 Gene3D Mitochondrial carrier domain 195 478 IPR023395 -
Apr6g1390 480 ProSiteProfiles Solute carrier (Solcar) repeat profile. 295 382 IPR018108 -
Apr6g1390 480 Gene3D - 112 187 - -
Apr6g1390 480 PRINTS Mitochondrial carrier protein signature 204 217 IPR002067 GO:0055085
Apr6g1390 480 PRINTS Mitochondrial carrier protein signature 217 231 IPR002067 GO:0055085
Apr6g1390 480 PRINTS Mitochondrial carrier protein signature 257 277 IPR002067 GO:0055085
Apr6g1390 480 PRINTS Mitochondrial carrier protein signature 310 328 IPR002067 GO:0055085
Apr6g1390 480 PRINTS Mitochondrial carrier protein signature 355 373 IPR002067 GO:0055085
Apr6g1390 480 PRINTS Mitochondrial carrier protein signature 402 424 IPR002067 GO:0055085
Apr6g1390 480 Gene3D - 4 101 - -
Apr6g1390 480 SMART efh_1 100 128 IPR002048 GO:0005509
Apr6g1390 480 SMART efh_1 136 164 IPR002048 GO:0005509
Apr6g1390 480 SMART efh_1 69 97 IPR002048 GO:0005509
Apr6g1390 480 CDD EFh 33 94 IPR002048 GO:0005509
Apr6g1390 480 ProSiteProfiles Solute carrier (Solcar) repeat profile. 393 476 IPR018108 -
Apr6g1390 480 SUPERFAMILY EF-hand 24 199 IPR011992 -
Apr6g1390 480 Pfam Mitochondrial carrier protein 295 385 IPR018108 -
Apr6g1390 480 Pfam Mitochondrial carrier protein 198 286 IPR018108 -
Apr6g1390 480 Pfam Mitochondrial carrier protein 394 477 IPR018108 -
Apr6g1390 480 SUPERFAMILY Mitochondrial carrier 198 471 IPR023395 -
Apr6g1390 480 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Apr6g1390 480 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 47 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1390 Apr-Chr6 21136777 21141034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1390 13 480 EF-hand Containing Proteins AT5G51050 74.840 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1390 K14684 - gmx:100777729 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1390 6 21136777 21141034 Apr6g1390 6 21136777 21141034 ECH
Apr4g1525 4 16414756 16426433 Apr6g1390 6 21136777 21141034 ECH
Apr4g1525 4 16414756 16426433 Apr6g1390 6 21136777 21141034 PCT