Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1525 ATGGGTATGAAGGAGAATGAGGAGCGTGGCAAGGCGTCGAAGAAGGCGTTGCCGGCGACGATGGATCACGTGTTGCTGGCATTGCAGGAAACGAAGGAAGAGAGAGAAACGAGAATTCGAAGCCTCTTCGGTTTCTTCGATAAGGAGAATCGAGGTTACTTGGATTACGTGCACATTCAGGAAGGTCTCTCGGCGCTTCAGATTCCGTCAGAGTATAAGTACGCGAAGGATTTGTTGAACGCTTGTGATGCAAACAAGGATGGAAGAGTGGATTACCAAGAGTTCAAGAGGTACATGGATGACAAGGAGCTCGAGCTTTATCGCATATTTCAGGCCATTGATGTTGCGCATAATGGATGCATTTTGCCGGAGGAGCTATGGGAGGCACTAGTGAGAGCAGGGATTAAGATTGATGATGAAGAACTTGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACCATTGAGAACATTTACCATTATTTGGAGCGGATATGCATGGTTGATATTGGGGAGCAAACTGTTATTCCGGCTGGCATTAGCAAGCACATTCATGCAAGCAGTTATCTGATTGCAGGAGGAGTAGCAGGTGCAACATCACGCACAGCAACTGCACCCCTTGACCGTTTAAAGGTTGTCTTGCAAGTCCAAACAGCACGAGCTCATATAATGCCTGCAGTAAAAGATATATGGAAAGAAGGTGGTCTTTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTCAAGGTGGCCCCAGAGAGTGCCATTAAATTTTATACCTTTGAGATGCTGAAGACTTTCATTGGGAATGCTAAAGGAGAAGAGGGAAAGGCTGATATAGGAGCAATGGGGCGGCTGCTAGCCGGTGGTATTGCTGGTGCTGTAGCTCAAACTGCAATATATCCCATGGACCTAGTTAAAACACGACTACAAACCTATGCTTGTGACAGTGGAAGAATTCCTAATCTTGGAACTCTTTCAAAAGATATATGGGTTAAAGAAGGACCCCGGGCATTTTATAGGGGACTGATCCCTTCTCTTCTTGGGATTATCCCATATGCTGGGATAGATCTTGCTGCATATGAGACCTTGAAGGATGTGTCCAAGAAGTATATTCTTCATGATTCAGAACCTGGCCCTCTAGTACAATTAGGATGTGGAACTGTATCTGGAGCTCTTGGAGCAACATGTGTTTACCCGTTGCAGGTGGTTAGAACAAGAATGCAGGCTCAACGCTTCTATAAAGGAATGGCTGATGTATTCAGGAAAACCATGGAACATGAAGGCTTTAGGGGATTTTACAAAGGAATATTTCCTAACATGCTCAAAGTTGTACCTTCGGCAAGTATCACTTACGTGGTTTATGAGTATATGAAAAAAGGTTTGGATTTGAAATGA 1458 0.4403 MGMKENEERGKASKKALPATMDHVLLALQETKEERETRIRSLFGFFDKENRGYLDYVHIQEGLSALQIPSEYKYAKDLLNACDANKDGRVDYQEFKRYMDDKELELYRIFQAIDVAHNGCILPEELWEALVRAGIKIDDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEQTVIPAGISKHIHASSYLIAGGVAGATSRTATAPLDRLKVVLQVQTARAHIMPAVKDIWKEGGLLGFFRGNGLNVLKVAPESAIKFYTFEMLKTFIGNAKGEEGKADIGAMGRLLAGGIAGAVAQTAIYPMDLVKTRLQTYACDSGRIPNLGTLSKDIWVKEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDVSKKYILHDSEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRFYKGMADVFRKTMEHEGFRGFYKGIFPNMLKVVPSASITYVVYEYMKKGLDLK* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1525 485 PRINTS Mitochondrial carrier protein signature 209 222 IPR002067 GO:0055085
Apr4g1525 485 PRINTS Mitochondrial carrier protein signature 222 236 IPR002067 GO:0055085
Apr4g1525 485 PRINTS Mitochondrial carrier protein signature 262 282 IPR002067 GO:0055085
Apr4g1525 485 PRINTS Mitochondrial carrier protein signature 315 333 IPR002067 GO:0055085
Apr4g1525 485 PRINTS Mitochondrial carrier protein signature 360 378 IPR002067 GO:0055085
Apr4g1525 485 PRINTS Mitochondrial carrier protein signature 407 429 IPR002067 GO:0055085
Apr4g1525 485 Gene3D - 1 105 - -
Apr4g1525 485 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Apr4g1525 485 Pfam EF hand 76 97 IPR002048 GO:0005509
Apr4g1525 485 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 287 IPR018108 -
Apr4g1525 485 Gene3D - 117 192 - -
Apr4g1525 485 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 51 482 - -
Apr4g1525 485 SUPERFAMILY EF-hand 25 204 IPR011992 -
Apr4g1525 485 ProSiteProfiles EF-hand calcium-binding domain profile. 106 136 IPR002048 GO:0005509
Apr4g1525 485 PANTHER SOLUTE CARRIER FAMILY 25 51 482 - -
Apr4g1525 485 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Apr4g1525 485 ProSiteProfiles EF-hand calcium-binding domain profile. 137 172 IPR002048 GO:0005509
Apr4g1525 485 SMART efh_1 74 102 IPR002048 GO:0005509
Apr4g1525 485 SMART efh_1 38 66 IPR002048 GO:0005509
Apr4g1525 485 SMART efh_1 141 169 IPR002048 GO:0005509
Apr4g1525 485 SMART efh_1 105 133 IPR002048 GO:0005509
Apr4g1525 485 Pfam EF-hand domain pair 105 164 IPR002048 GO:0005509
Apr4g1525 485 Pfam Mitochondrial carrier protein 300 390 IPR018108 -
Apr4g1525 485 Pfam Mitochondrial carrier protein 399 482 IPR018108 -
Apr4g1525 485 Pfam Mitochondrial carrier protein 203 290 IPR018108 -
Apr4g1525 485 ProSitePatterns EF-hand calcium-binding domain. 150 162 IPR018247 -
Apr4g1525 485 Gene3D Mitochondrial carrier domain 200 483 IPR023395 -
Apr4g1525 485 ProSiteProfiles Solute carrier (Solcar) repeat profile. 398 481 IPR018108 -
Apr4g1525 485 SUPERFAMILY Mitochondrial carrier 203 478 IPR023395 -
Apr4g1525 485 ProSiteProfiles Solute carrier (Solcar) repeat profile. 300 387 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1525 Apr-Chr4 16414756 16426433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1525 14 484 EF-hand Containing Proteins AT5G51050 73.517 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1525 K14684 - gmx:100775805 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1525 4 16414756 16426433 Apr4g1525 4 16414756 16426433 ECH
Apr4g1525 4 16414756 16426433 Apr6g1390 6 21136777 21141034 ECH
Apr4g1525 4 16414756 16426433 Apr6g1390 6 21136777 21141034 PCT