Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1061 ATGAACAGAAAAAAAGGGGTCATTTCCATTAATGTTGAAGAAGCTGCAGTGGACTTTTTCAACCATCTCTTGCAGGAGCAGCCCCGGATTACTTTCTTCATTCCACTGTTTCTGATTGCTTGGGCTATAGAGAGATGGGTCTTCTCGGTCTCCACTTGGGTTCCTCTTGCACTTGCTGTGTGGACTACTATACAGTATGGGAGATATCAACGCAAACTACTTGTGGAGGACTTGGATAAGAAATGGAAGCGAATCATACTGAATGTCTCGCCCATCACACCATTGGAGCACTGCGAGTGGTTGAACAAGTTGTTGACAGAAGTATGGTCCAACTATTTTAACCCCAAGTTTTCAACAAGGCTATCAGCTATAGTTGAGAAACGCTTAAAGCTTCGGAAACCAAGACTTCTTGAAAGAGTTGAGTTACAGGAGTTTTCACTGGGATCATGCCCTCCTAGTGTGGCTTTGCAAGGGATGCGGTGGTCAACTATTGGTGATCAGCGAGTCCTGCAACTTGGTTTTGATTGGGATACAAATGAAATGAGCATTTTGATGCTTGCTAAGCTTGCAAAGCCATTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGTTACACCAATTCTTGATGGAAAAGCACTTCTGTATTCATTTGTATCAACTCCTGAGGTGAGAATAGGAATTGCATTTGGAAGCGGTGGAAGCCAGTCACTTCCTGCTACTGAGTGGCCTGGTGTTTCTTCATGGCTGGAAAAGCTTTTTACTGACACTTTGGTTAAAACAATGGTGGAACCTCGGCGCCGTTGTTTCACTTTGCCTGCAGTTGATTTAAGAAAGAAGGCAGTTGGAGGCATAATATATATTAGAGTGATGTCTGCAAATAAACTTTCTAGAAGTTCCTTCAAGACATCTAGGAGGCAACAAAATGGTACAACCAATGGTTATTCAGAGGACAATTTTGATGAGAAGGACCTTCAGACATTTGTGGAGGTAGAAGTTGAGGAATTAACCAGGAGAACAGATGTGAGAGTGGGTTCAACCCCTAGATGGGATGCACCATTTAATATGGTTTTACATGATAATACAGGAACTATACGGTTCAATCTTTATGAGTGCCGTCCCAGCAATGTAAAGTGTGACTATTTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCCACAATAATGTGGGCTATAGGACCTGATTCTGGAGTCATAGCAAAGCAAGCACAGTTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGAGGGGACCAACTCTGGAGAGTTGAAGGTGAGCATTGTGGTAAAAGAGTGGCAATTTTCTGATGGTACACATAGCTTGAACAATCTCCGAAATAGCTCTCAGCAGTCACTTAATGGATCGTCAAATCTTCAGTTAAGAACTGGAAGGAAACTTAACGTAACTGTTGTAGAAGGAAAGGATCTTGCTGCAAAAGAGAAATCTGGAAAATTTGACACATACATTAAATTGCAGTATGGAAAGGTTGTCCAGAAAACAAGGACGGCTCATACTCCAAATCCTTCCTGGAATCAGACATTTGAATTTGATGAGATTGGTGGCGGTGAATACTTGAGAATAAAAGGCTTTACTGAAGAAATTTTTGGAGATGAAAACATTGGTAGTGCACATGTGAATTTGGAAGGACTGGTTGATGGTTCAGTCAGGGATGTATGGATCCCCCTTGAAAGAGTGCGCTCTGGAGAATTAAGACTTAAAATAGAAGCAGTTAGAGTGGACGACCAAGAAGGATCAAGGGTTTTGGGCTCTGGCGGTGGTTGGATTGAACTTGTTCTAATTGAAGGAAGGGATCTTGTTGCTGCCGATCTCAGAGGCACAAGTGATCCATATGTGAGGGTACACTACGGTAGCTTTAAGAAAAGGACAAAGGTTATATACAAAACTCTTAACCCTCAGTGGAACCAGACCCTAGAATTCCCTGATGATGGAAGTCCCTTGGTACTTTATGTTAAGGACCACAATGCATTACTACCCACATCAAGTATAGGCGAATGTGTTGTAGAATATCAAAGGTTACCTCCAAATCAGACGGCCGACAAGTGGATACCTCTCCAAGGAGTGAAAAGGGGTGAGATTCACATCCAAATTACTAGAAAAGTTCCAGAGACACAAAGGAGACTAAGTCTAGAATCTGAACCTTCCTTGAGTAAATTACACCAAATTCCTAGCCAGATAAAACAGATGATGATTAAGTTCAGGTCCTTAATAGAGGATGGAAATCTTGAAGGACTAGCTACAATATTGAGTGAGCTAGAAACTCTAGAGGATACACAGGAAGGGTACATTGTCCAATTGGAGACTGAACAAATGCTTCTTCTCAGAAAGATAAAAGAACTTGGCCAGGAAATTATTAATTCTTCTCCTTCCCTCAACAGAAGATTTTCTGGAACTGGAAACTGA 2475 0.4149 MNRKKGVISINVEEAAVDFFNHLLQEQPRITFFIPLFLIAWAIERWVFSVSTWVPLALAVWTTIQYGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNPKFSTRLSAIVEKRLKLRKPRLLERVELQEFSLGSCPPSVALQGMRWSTIGDQRVLQLGFDWDTNEMSILMLAKLAKPLIGTARIVINSLHIKGDLLVTPILDGKALLYSFVSTPEVRIGIAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVMSANKLSRSSFKTSRRQQNGTTNGYSEDNFDEKDLQTFVEVEVEELTRRTDVRVGSTPRWDAPFNMVLHDNTGTIRFNLYECRPSNVKCDYLASCEIKMRHVEDDSTIMWAIGPDSGVIAKQAQFCGDEIEMVVPFEGTNSGELKVSIVVKEWQFSDGTHSLNNLRNSSQQSLNGSSNLQLRTGRKLNVTVVEGKDLAAKEKSGKFDTYIKLQYGKVVQKTRTAHTPNPSWNQTFEFDEIGGGEYLRIKGFTEEIFGDENIGSAHVNLEGLVDGSVRDVWIPLERVRSGELRLKIEAVRVDDQEGSRVLGSGGGWIELVLIEGRDLVAADLRGTSDPYVRVHYGSFKKRTKVIYKTLNPQWNQTLEFPDDGSPLVLYVKDHNALLPTSSIGECVVEYQRLPPNQTADKWIPLQGVKRGEIHIQITRKVPETQRRLSLESEPSLSKLHQIPSQIKQMMIKFRSLIEDGNLEGLATILSELETLEDTQEGYIVQLETEQMLLLRKIKELGQEIINSSPSLNRRFSGTGN* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1061 824 PANTHER PLANT SYNAPTOTAGMIN 4 816 - -
Apr6g1061 824 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
Apr6g1061 824 SMART C2_3c 483 577 IPR000008 -
Apr6g1061 824 SMART C2_3c 292 408 IPR000008 -
Apr6g1061 824 SMART C2_3c 612 706 IPR000008 -
Apr6g1061 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 610 722 IPR035892 -
Apr6g1061 824 CDD C2 613 709 - -
Apr6g1061 824 Gene3D C2 domain 288 454 IPR035892 -
Apr6g1061 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 285 404 IPR035892 -
Apr6g1061 824 Coils Coil 787 807 - -
Apr6g1061 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 482 594 IPR035892 -
Apr6g1061 824 Gene3D C2 domain 606 724 IPR035892 -
Apr6g1061 824 Gene3D C2 domain 465 597 IPR035892 -
Apr6g1061 824 PANTHER OS01G0128800 PROTEIN 4 816 - -
Apr6g1061 824 Pfam C2 domain 613 709 IPR000008 -
Apr6g1061 824 Pfam C2 domain 292 402 IPR000008 -
Apr6g1061 824 Pfam C2 domain 483 580 IPR000008 -
Apr6g1061 824 ProSiteProfiles C2 domain profile. 462 578 IPR000008 -
Apr6g1061 824 CDD C2 484 580 - -
Apr6g1061 824 ProSiteProfiles C2 domain profile. 584 707 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1061 Apr-Chr6 15294036 15301196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1061 484 753 Lipid Metabolism Gene Families AT3G57880 23.839 6.00e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1061 - - gmx:100789237 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1061 6 15294036 15301196 Apr2g1456 2 20621680 20628099 ECH
Apr6g1061 6 15294036 15301196 Apr6g1061 6 15294036 15301196 ECH
Apr2g1456 2 20621680 20628099 Apr6g1061 6 15294036 15301196 PCT