Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1456 ATGAGTAGTAGGGAGAAAATGTTAATTCCCATTCGTTTGGAAGAGGCTGCAGTGGACTTGTTAAACCATCTTGTGAAGCTGAAGGAGGAGGCTAAGATTTCACTCTTCATTCCTCTCATTTTGATTGCTTGGGCTATTCATAGATGGTTCTTCTCTTTCTCCAATTGGCTTCCTCTTGCACTTGCTTTATGGGGATCTATACAATATGGAAACTATCAACGCAAACTACTTGAGGAGGACTTGAATAAGAAATGGAACCGGATCATACTCAACACCTCGCCCATGACACCAGTGGAACACTGTGAGTGGTTGAATCTGCTATCGACACAAATTTGGTCCAACTATTTTAACCCTAGGTTATCAAGAAGGTTATCAAACATAGTTGAGAAACGTTTAAAGCTCCGGAAACCAAGATTTATAGAAAAAGTTGAGGTGCAGGAGTTTTCACTTGGATCATGCCCCCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGGTCAGCGAGTCCTAAAGATGGGTTTTGATTGGGATACCAGTGAAATGAGCATTCTGATGCTTGCTAAGCTTTCGGTTGGAACTGCCAAAATTCTGATCAACAGTCTTCATATAAAGGGTGATCTTCTGGTGACACCAATTTTGGATGGAAAAGCACTTCTATATTCATTTTTATCGACACCTGAGGTGGGAATAGGAGTTGCCTTTGGAAGCGGTGGAAGCCAATCAGCCACTGAGTTGCCTGGTGTTTCTCCTTGGCTGAAAAAACTTTTTACTGATACCTTGGTTAAAACCATGGTTGAACCCCGGCGCCGGTGTTTCACTTTGCCTGTAGTTAATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTTTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTACTTCAGGAGGAACTCATCTTGGATGCAAGAAAATGGCATAGTCAATGGATGTTCAGAAAACAACATGGATGACAGGAACTTACAGACATTTGTTGAGGTAGAAGTCGAGGAATTGACAAGGAGGACGGGTGTGAGCTCTGGCTCAACTCCAAAATGGGATGAAACATTTAATATGGTTTTGCATGATAATACGGGAATTGTTCGCTTCAATCTTTATGAGAGTCCCCCCAGTGGCGTCAAGTTTGACTACCTAGCAAGTTGTGAAATCAAGATGAGACATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGGAAAGATTCTGGTGTCATAGCAAAGCATGCAAAGTTTTGTGGTGATGAAGTTGAAATGGTTGTACCATTTGAGGGGACCAACTCAGCAGAGTTAAAGGTGAAAATTGTAGTGAAAGAGTGGCAATTTTCCGATGGTTCTCATAGCTTGAACAATCTCCATGCTAGTTCTCGGCAATCACTTATTGGATCATCAAATCTTCTGTCAAAAACTGGAAGGAAACTCAAGATAACTGTTGTGGAAGCAAAGGACCTTGCTGCAAGAGATAAATTTGGAAAATTTGAACCATACATTAAGTTGCAGTATGGAAAGGTTGTCAAGAGAACCCATGTTGCTCCTCATCCTACTACACCAAATCCTGTCTGGAATCATTTATTTGAATTTGATGAGAATGATGGTGATGAATACCTTAATGTAAAGTGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATGGGAAGTGCACGTGTAAACTTGGAAGGACTGGAGGACGGGTCAATCAAGGATGTATGGATCCCTCTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATAGAAGTTGTTAAGGTGGAAGACCTAGAAGGATCAAAGGATTCAGCCCATGGTTGGATAGAACTTGTTCTTATTGAAGCAAGGGATCTTGTTGCTGCTGATCGTGGAGGGACAAGTGATCCCTATGTGAGGGTAAATTATGGAAACTTGAAGAAAAGGACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAGACCTTAGAGTTCCTTGACGATGGCAGTCCCCTGACACTGCATGTTAAGGACCATAATGCTTTACTTCCCACATCAAGTATAGGTGTATGTGTCGTGGAATATCAAAGGTTTCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTTCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATTACAAGAAAAATTCCAGAGATGCAAACGAGACATGAACAAGACTCTGATCCTTCGTTAAGTAAATCACACCAAATTCCAAGCCAGATAAGAGAGATGATGAAAAAGTTTCGATCTTTAATAGAGGATGGAAATCTCGAAGGACTGTCTACAACTTTGAGTGAATTAGAAACTCTAGAGGATACAAAAGAAGGGTATATAGCACAGTTGGAGACTGAGCAAATGCTTCTTCTGAGCAAAATAAATGAACTGGGCCAGGAAATGGTCAATTCTTCTTCTTCCCTTACCAGTAGTTCTTCTCAAAGTGGAAATTAA 2478 0.4096 MSSREKMLIPIRLEEAAVDLLNHLVKLKEEAKISLFIPLILIAWAIHRWFFSFSNWLPLALALWGSIQYGNYQRKLLEEDLNKKWNRIILNTSPMTPVEHCEWLNLLSTQIWSNYFNPRLSRRLSNIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGGQRVLKMGFDWDTSEMSILMLAKLSVGTAKILINSLHIKGDLLVTPILDGKALLYSFLSTPEVGIGVAFGSGGSQSATELPGVSPWLKKLFTDTLVKTMVEPRRRCFTLPVVNLRKTAVGGIIYVSVISANKLSRSYFRRNSSWMQENGIVNGCSENNMDDRNLQTFVEVEVEELTRRTGVSSGSTPKWDETFNMVLHDNTGIVRFNLYESPPSGVKFDYLASCEIKMRHVEDDSTIMWAIGKDSGVIAKHAKFCGDEVEMVVPFEGTNSAELKVKIVVKEWQFSDGSHSLNNLHASSRQSLIGSSNLLSKTGRKLKITVVEAKDLAARDKFGKFEPYIKLQYGKVVKRTHVAPHPTTPNPVWNHLFEFDENDGDEYLNVKCFSEEIFGDENMGSARVNLEGLEDGSIKDVWIPLEGVSSGELRLKIEVVKVEDLEGSKDSAHGWIELVLIEARDLVAADRGGTSDPYVRVNYGNLKKRTKVIHKTLNPRWNQTLEFLDDGSPLTLHVKDHNALLPTSSIGVCVVEYQRFPPNQMSDKWIPLQGVKSGEIHIQITRKIPEMQTRHEQDSDPSLSKSHQIPSQIREMMKKFRSLIEDGNLEGLSTTLSELETLEDTKEGYIAQLETEQMLLLSKINELGQEMVNSSSSLTSSSSQSGN* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1456 825 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 482 601 IPR035892 -
Apr2g1456 825 MobiDBLite consensus disorder prediction 728 747 - -
Apr2g1456 825 CDD C2 335 403 - -
Apr2g1456 825 PANTHER OS01G0128800 PROTEIN 1 820 - -
Apr2g1456 825 CDD C2 614 710 - -
Apr2g1456 825 SMART C2_3c 290 408 IPR000008 -
Apr2g1456 825 SMART C2_3c 483 580 IPR000008 -
Apr2g1456 825 SMART C2_3c 592 707 IPR000008 -
Apr2g1456 825 Gene3D C2 domain 473 600 IPR035892 -
Apr2g1456 825 Gene3D C2 domain 601 725 IPR035892 -
Apr2g1456 825 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 323 405 IPR035892 -
Apr2g1456 825 Coils Coil 788 808 - -
Apr2g1456 825 Pfam C2 domain 290 402 IPR000008 -
Apr2g1456 825 Pfam C2 domain 614 710 IPR000008 -
Apr2g1456 825 Pfam C2 domain 483 583 IPR000008 -
Apr2g1456 825 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 97 278 IPR031468 GO:0008289
Apr2g1456 825 PANTHER PLANT SYNAPTOTAGMIN 1 820 - -
Apr2g1456 825 ProSiteProfiles C2 domain profile. 465 581 IPR000008 -
Apr2g1456 825 Gene3D C2 domain 288 424 IPR035892 -
Apr2g1456 825 ProSiteProfiles C2 domain profile. 587 708 IPR000008 -
Apr2g1456 825 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 609 723 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1456 Apr-Chr2 20621680 20628099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1456 484 749 Lipid Metabolism Gene Families AT3G61300 24.367 1.33e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1456 - - ccaj:109803570 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1061 6 15294036 15301196 Apr2g1456 2 20621680 20628099 ECH
Apr2g1456 2 20621680 20628099 Apr2g1456 2 20621680 20628099 ECH
Apr2g1456 2 20621680 20628099 Apr6g1061 6 15294036 15301196 PCT