Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0775 ATGGCCATAGAGTGCATTACAAGTATACAATCCATGCCTCAACCACAAAAGCACCACCAAGAAGATGAATCACCATTGGTTTTTGACGCCTCAATTTTGAGGCACCAACTCCATCTTCCAACACAGTTCATTTGGCCTGATGAAGAGAAGCCATGCATGAATGTGCCTGAACTTGTTGTCCCTCTCATTGACTTGGGAGGCTTCCTCTCCGGCGACCCAATTATGACCATGGAAGCCGCAAGGCTCGTCGGAGAGGCATGCCGAAACCACGGTTTCTTTCTAGTTGTGAACCATGGGATTGATGCCAAGTTGATCTCCCATGCTCATAGTTACATGGATGAGTTTTTTGAGACTCCCCTGTCTCAGAAACAGAGGGCTCAGAGGAAAACAGGGGAACACTGTGGTTATGCTAGTAGCTTCACTGGCAGGTTCTCCTCCAAGCTTCCATGGAAAGAGACACTTTCTTTTCAGCATTCAGCTGAGAAAAACTCATCCACAATTGTCAAAGACTACTTGTGCAACACATTGGGAAAAGAGTTTGAGCAATTTGGGAAGGTTTACCAGGACTATTGTGATTCCATGAGCACTCTTTCTTTAGGGATAATGGAACTTCTTGGAATGAGTCTTGGAGTTGGCAAAGTTTTCAGAGAGATTTTTGAAGAGAATAGTTCAATAATGAGGCTCAATTACTACCCTCCTTGTCAAAAGCCCGACCTCACTTTAGGCACTGGACCTCACTGTGATCCAACATCTTTAACAATTCTTCACCAGGACCAAGTGGGTGGTTTACAAGTTTTTGTTGACAATGAGTGGCATTCCATTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGGCTCTTTCAAATGGGAGGTACAAAAGTTGCTTGCATAGGGCAGTGGTGAACAACAAGACAACAAGAAAATCTCTTGCTTTCTTTTTGTGTCCAAAAAGTGATAAGGTGGTAAGTCCACCTAGTGAATTGGTGGATGATTTGACCCCAAGGGTATACCCAGATTTTACATGGCCTATGCTGCTTGAGTTTACTCAGAAACACTATAGAGCCGACATGAAAACCCTTGAGGCATTCACCAACTGGCTTCAACAGAAAAGGAGCTGA 1134 0.4392 MAIECITSIQSMPQPQKHHQEDESPLVFDASILRHQLHLPTQFIWPDEEKPCMNVPELVVPLIDLGGFLSGDPIMTMEAARLVGEACRNHGFFLVVNHGIDAKLISHAHSYMDEFFETPLSQKQRAQRKTGEHCGYASSFTGRFSSKLPWKETLSFQHSAEKNSSTIVKDYLCNTLGKEFEQFGKVYQDYCDSMSTLSLGIMELLGMSLGVGKVFREIFEENSSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGLQVFVDNEWHSISPNFNAFVVNIGDTFMALSNGRYKSCLHRAVVNNKTTRKSLAFFLCPKSDKVVSPPSELVDDLTPRVYPDFTWPMLLEFTQKHYRADMKTLEAFTNWLQQKRS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0775 377 SUPERFAMILY Clavaminate synthase-like 35 361 - -
Apr6g0775 377 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 222 321 IPR005123 -
Apr6g0775 377 Gene3D - 32 359 IPR027443 -
Apr6g0775 377 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 17 374 - -
Apr6g0775 377 Pfam non-haem dioxygenase in morphine synthesis N-terminal 60 164 IPR026992 -
Apr6g0775 377 PRINTS Isopenicillin N synthase signature 83 100 - -
Apr6g0775 377 PRINTS Isopenicillin N synthase signature 246 267 - -
Apr6g0775 377 PRINTS Isopenicillin N synthase signature 281 307 - -
Apr6g0775 377 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 374 - -
Apr6g0775 377 Pfam 2OG-Fe(II) oxygenase superfamily 224 321 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0775 Apr-Chr6 12098272 12100086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0775 37 371 Glycosyltransferase AT5G59530 28.902 5.09e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0775 K05282 - gmx:100305378 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0775 6 12098272 12100086 Apr6g0775 6 12098272 12100086 ECH
Apr6g0775 6 12098272 12100086 Apr8g2251 8 32959760 32961093 PCT