LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr6g0609	ATGGCTCAGGTTGTGGCCATGCGATCCATTCAGAGCACCCTTTTGAGCCCCGCTTCTGGATCTGCAAATGAAAAGGCTCAGAAACTGTTGAAGCCTCCAACTTTTGCTTCCAAAGTGTTCCATTCTGAAGGGAACAAAAACTCTCAACTTGGCATCAGAAGCTTTCAGATCAGTGCAAGGAAATCTGCCCCTGCTGAAGTTGTCCCGGTATCACCCGAAGATGATCCAAAGATTGAGGAGCATTTGCAGCATTTACGTGGGGTGCAACCACTTGGTGACAATTCGGCTGGAATGTGGTCTAAGCCAACGTTTAGGCGCAAGACGAAGATAGTGTGTACTATTGGACCTTCTACCGATACAAGGGAAATGATTTGGAAGTTGGCTGAGGCTGGGATGAATGTTGCTAGACTCAATATGTCGCATGGAGATCATGCTTCTCATCAGAAAGTTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAAGATAATGTGATTGCAATTATGCTTGACACTAAGGGTCCTGAGGTTAGGAGTGGGGATTTGCCTCAACCAATCACATTAACAACTGGGCAGGAATTCACTTTTACTATTCAGAGAGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGATGATTTTGTCAATGATGTGGAAGTAGGGGACATGCTTCTTGTTGATGGCGGTATGATGTCTATGGTGGTTAAGTCTAAGACAGAGGCTTCTGTGAAATGTGAAGTTATTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAATGTTAGAGGAAAAAGTGCAACACTGCCTTCAATCACTGAGAAGGATTGGGATGATATCAAGTTTGGAGTGGATAACAAAGTTGACTTCTATGCTGTTTCCTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAGCTGTGGTGCTGATATACATGTCATCGTGAAAATTGAGAGTGCAGACTCTATACCAAACTTGCATTCAATTATCACCGCATCTGATGGGGCTATGGTTGCTAGAGGAGATCTTGGTGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGGAAGAGATTATCAGCTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCAACTAATATGCTAGAAAGCATGATTGTTCACCCAACTCCAACCAGAGCTGAGGTATCAGATATAGCAATTGCTGTTCGAGAAGGTTCTGATGGAATAATGCTGTCCGGTGAAACAGCTCATGGAAAGTTCCCTCTAAAAGCTGTGAAAGTAATGCACACAGTAGCATTGCGGACAGAAGCCACTATACCAGGTGGTCAAATGCCACCTAATATTGGTCAAGTGTTCAAGAACCACATGAGTGAGATGTTTGCGTACCATGCCACCATGATGTCTAACACCCTTGGAACCTCAACTGTTGTCTTCACTAGAACAGGTTTCATGGCTATCCTATTGAGCCACTATCGTCCTTCGGGCACCATATTTGCTTTTACAGACGAGAAGAGGGTACAGCAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATATACATGGAATTCTGTGAGGACGCTGAAGAGACTTTCCGGAGAGCCTTGGATTTGCTACAGAAACAAGGAATGGTGAAGGAAGGAGAAGAAGTGGCACTTGTACAAAGTGGTAGGCAACCCATATGGAGGTTCCAATCCACTCACAATATTCAGGTTAGGAAAGTGTAA	1728	0.4375	MAQVVAMRSIQSTLLSPASGSANEKAQKLLKPPTFASKVFHSEGNKNSQLGIRSFQISARKSAPAEVVPVSPEDDPKIEEHLQHLRGVQPLGDNSAGMWSKPTFRRKTKIVCTIGPSTDTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTTGQEFTFTIQRGVGTADCVSVNYDDFVNDVEVGDMLLVDGGMMSMVVKSKTEASVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIISLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAILLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPIYMEFCEDAEETFRRALDLLQKQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV*	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr6g0609	575	SUPERFAMILY	PK beta-barrel domain-like	175	266	IPR011037	-
	Apr6g0609	575	ProSitePatterns	Pyruvate kinase active site signature.	316	328	IPR018209	GO:0004743\|GO:0006096
	Apr6g0609	575	PANTHER	PLASTIDIAL PYRUVATE KINASE 2	43	575	-	-
	Apr6g0609	575	SUPERFAMILY	PK C-terminal domain-like	424	575	IPR036918	-
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	164	180	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	288	302	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	318	344	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	345	369	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	370	394	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	395	413	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PRINTS	Pyruvate kinase family signature	414	430	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	Gene3D	-	448	575	IPR036918	-
	Apr6g0609	575	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	98	440	IPR015813	GO:0003824
	Apr6g0609	575	Pfam	Pyruvate kinase, alpha/beta domain	463	555	IPR015795	-
	Apr6g0609	575	Pfam	Pyruvate kinase, barrel domain	106	441	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	PANTHER	PYRUVATE KINASE	43	575	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	TIGRFAM	pyruv_kin: pyruvate kinase	106	574	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr6g0609	575	Gene3D	-	108	433	IPR040442	-
	Apr6g0609	575	Gene3D	-	176	269	IPR015806	GO:0004743\|GO:0006096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr6g0609	Apr-Chr6	8757489	8766554	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr6g0609	K00873		-	gmx:100803036	1057.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr6g0609	6	8757489	8766554	Apr6g0609	6	8757489	8766554	ECH
	Apr6g0609	6	8757489	8766554	Apr8g2136	8	31963039	31968396	PCT