Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0471 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGAGCCTCTTCCTCTTCCTTTGGCAATGCTGGAATACCCTCCACTGCCAACCCTGGATTTTCACAGTCCCAATCTCAACCCCAGATTCCTGTTGGTTTTCAAGGGCAGTTTCCACTGTCCCAAGCCCATGCTATTGTCCAAGCACAGTCTAAGGCCCAGGCCCAGGCCCAGGCTCATGCCCAAGCAGCAGCTGCAGCCCATGCTCAACTCCAGGCTCATTTGCAGGCTCAAGGGTTGAGTCTTGGTCAGAATCAGGTCGGGGGTTTGGGGGTGTCGTCGTCGGGTTCGACGCCTGGCAATGTGAGTGGGAAGCGGATCCCTCTGAAACCCCCAATTCGTCCTGTTGGATTTTCCCCTGCCAACCACTTCTCGCCTTTGAGACCAATGGATCTTACACCTGCCGCACGGAGGAAGAAGCAGAAGCTCCCCGAGAAACAGTTACAAGATAAAGTGGCTGCTATACTGCCTGAGTCTGCTCTGTATACCCAGCTTCTTGAGTTTGAGTCTCGTGTCGATTCAGCACTTGCTAGAAAGAAGATTGACATCCAGGAAGCGCTGAAAAATCCACCTAGTATTCAAAAAACTCTTCGCATATATGTATTTAACACTTTTGCTAACCAAATTCGCACAATTCCTAAGAAGCCAAATGCTGAGCCTCCAACCTGGACACTGAAGATTGTTGGGAGGATATTGGAAGATGGTGTTGACCCTGATCAGCCAGGAGTAGTTCAGAAGTCATCTCCTTTATATCCTAAGTTTTCAGCCTTCTTCAAAAGAGTAACCATTTCTTTGGACCAGAGACTATATCCTGATAATCACATTATTATGTGGGAGAATGCTCGATCACCTGCCCCTCATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAATTTACAGTGAATATACGGCTGGAAATGAATTATGTGCCTGAGAAGTATAAGCTTTCACCAGCATTGACTGAAGTTCTTGGTATTGAGGTTGATACCCGCCCAAGAATCATTGCGGCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAAAACCCAAATGACCCTTCTTTCTTTCACTGTGATCAGCCTCTTCAGAAGGTATTTGGGGAAGAAAAGATGAAGTTTACCATGGTTTCACAGAAAATATCAACGCATTTGTTCCCTCCACAACCTATACTTTTGGAGCATAAGATCAAACTCTCAGGAAATAGTCCAGCTGGGACTGCTTGTTATGATGTGATGGTTGATGTTCCGTTTCCTATTCAGAGGGAGTTGTCTGCATTATTGGCTAATGTTGAAAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATCCATGAACACCGTAGGAGACGGGCATTCTTTCTTGGTTTCAGTCAATCACCAGTAGAATTTATTAATGCACTGATTGAATCTCAAAGCAGAGATCTGAAACTTGTAGCTGGAGAACCTAGTCGCAGTGCAGAAAAAGAGCGTCGATCAGATTTTTTCAATCAACCATGTGTGGAATTTGACATCTTGTTTGACAACTTGGGCAGGGTTGAGGATGCCGTTATTCGATATTTGAATCGCAAACCAGCTGCAGGAGGTGATGCTCCAGGAAGCACATGA 1662 0.4507 MSVNNNNPSKGIGASSSSFGNAGIPSTANPGFSQSQSQPQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQLQAHLQAQGLSLGQNQVGGLGVSSSGSTPGNVSGKRIPLKPPIRPVGFSPANHFSPLRPMDLTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDSALARKKIDIQEALKNPPSIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKYKLSPALTEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISTHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEPSRSAEKERRSDFFNQPCVEFDILFDNLGRVEDAVIRYLNRKPAAGGDAPGST* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0471 553 CDD SWIB_like 328 396 - -
Apr6g0471 553 ProSiteProfiles SWIB/MDM2 domain profile. 321 398 IPR003121 -
Apr6g0471 553 SUPERFAMILY SWIB/MDM2 domain 316 406 IPR036885 -
Apr6g0471 553 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 91 545 - -
Apr6g0471 553 Pfam SWIB/MDM2 domain 325 396 IPR003121 -
Apr6g0471 553 Gene3D SWIB/MDM2 domain 318 402 IPR036885 -
Apr6g0471 553 SMART swib_2 322 401 IPR019835 -
Apr6g0471 553 MobiDBLite consensus disorder prediction 102 141 - -
Apr6g0471 553 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 91 545 - -
Apr6g0471 553 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0471 Apr-Chr6 5579076 5582141 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Apr6g0471 SWIB 7.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0471 K11650 - gmx:100776562 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0471 6 5579076 5582141 Apr6g0471 6 5579076 5582141 ECH
Apr4g1631 4 18819531 18824202 Apr6g0471 6 5579076 5582141 ECH
Apr4g1631 4 18819531 18824202 Apr6g0471 6 5579076 5582141 PCT