Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1631 ATGTCTGCCAACAACAATAACCCTTCTAAGGGCCCTGGGGCCCCTTCGTCCTCCATACCCGGAACCTCCGCCTACCCACCTTCGCAGCTTGCGCCGGGCTTTCCGGGCCAGTTCCCACTCTCCCAAGCCCACGCCATTGTGCAAGCGCAGTTTCAGGCTCAGCTCCAAGCCCATGGGCTTTCTCTCAACCACAATTTAGCTCTGCCCGGCAATGCCAATAGCGCGAGCCTGAAACGTTTCCTTCCAAAACCCCCGGTTCACCCCGTTGGGTTTAACGCGGTCACTCCGTTTAAACCCATGGAGCTGACCCCCGCCGCCCGAAGAAAGAAGCAGAAGCTCAACGAGAAGCAGCTTCCTGAGAAGGTTGCCGCGATTCTGCCAGAGTCGGCGCTGTACACTCAGCTTCTTGAGTTTGAGGCTCGTGTTGACGCTGCTCTTGCTAGAAAGAAGGTTGACATACAAGAAGCGCTGAAGAACCCACCCTGCATTCAGAAAACTCTTAGAATTTACGTGTTCAACACTTTTGCGAATCAGAATCGCCCCGCCATGGGGAAGCCGAATGCCGAGCCTCCTACTTGGACTCTTAAGATAGTTGGGAGGATATTGGAAGATGGTGAAGACCCTGATCAGCCAGGAATTGTTCATAGGTCGTCGTCTCCTTTGTATCCCAAGTTCTCTGCGTTTTTCAAGAGAGTGACGATTTCCTTGGACAAGAGGCTGTATCCTGATAATCACCTCATCACGTGGGAGAACTCGCGATCCGCTGCGACTCATGAAGGTTTTGAGGTGAAGAGGAAGGGGGATAAGGAGTTCTCTGCGCATATACGGTTGGAAATGAATTATGTCCCGGAGAAGTTTATGCTTTCGCCGGCATTGAGAGAAGTGCTTGGTACTCAGGTTGACACCCGGCCGAGGATTGTTGCTGCAATTTGGCATTATGTGAAGGCTAGGAAATTGCAGAACCCAAATGACCCTTCTTTCTTTCACTGCGATCAGGCACTTCAGAAAGTGTTTGGGGAAGATAAGATGAAGTTTACTACGGTTTCGCAGAAAATATCGCAGCATTTGTTCCCTCCTCAGGTTGTACTTTTGGAGCATAAGATCAAGCTCTCTGGAAGTAGTCCTGTTGGATCTGCTTGTTATGATGTCATGGTTGATATTCCTTTTCCCATTCAGAGGGAATTGTCTGCTTTGTTGGCCAACATGGAGAAGAACAAAGAGATTGATGTGTGCGATGAATCCATATGTGGAATCATTAGGAAAATACATGAGCACCGAAGGAGACGAGCGTTCTTTGTTGGTTTCAGTCAATCTCCCGTGGAATTTATAAATGCCTTGGTCGAATCTCAAAGCAAGGATCTGAAGATTGCAGCTGGAGAATCTGGTCACAATGCTGAGAAAGAGCGTAGATCATCAGATTTATTTAACCAACCATGGGTTGAGGATGCGATCATTCGCTATTTGAATCGCAAACCGGCAGCAGGAGGCGAGGCTCCAGGGAGCACATGA 1509 0.4937 MSANNNNPSKGPGAPSSSIPGTSAYPPSQLAPGFPGQFPLSQAHAIVQAQFQAQLQAHGLSLNHNLALPGNANSASLKRFLPKPPVHPVGFNAVTPFKPMELTPAARRKKQKLNEKQLPEKVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCIQKTLRIYVFNTFANQNRPAMGKPNAEPPTWTLKIVGRILEDGEDPDQPGIVHRSSSPLYPKFSAFFKRVTISLDKRLYPDNHLITWENSRSAATHEGFEVKRKGDKEFSAHIRLEMNYVPEKFMLSPALREVLGTQVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQALQKVFGEDKMKFTTVSQKISQHLFPPQVVLLEHKIKLSGSSPVGSACYDVMVDIPFPIQRELSALLANMEKNKEIDVCDESICGIIRKIHEHRRRRAFFVGFSQSPVEFINALVESQSKDLKIAAGESGHNAEKERRSSDLFNQPWVEDAIIRYLNRKPAAGGEAPGST* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1631 502 ProSiteProfiles SWIB/MDM2 domain profile. 281 358 IPR003121 -
Apr4g1631 502 SMART swib_2 282 361 IPR019835 -
Apr4g1631 502 MobiDBLite consensus disorder prediction 1 25 - -
Apr4g1631 502 Pfam SWIB/MDM2 domain 285 356 IPR003121 -
Apr4g1631 502 CDD SWIB_like 288 356 - -
Apr4g1631 502 SUPERFAMILY SWIB/MDM2 domain 276 364 IPR036885 -
Apr4g1631 502 Gene3D SWIB/MDM2 domain 278 362 IPR036885 -
Apr4g1631 502 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 68 499 - -
Apr4g1631 502 MobiDBLite consensus disorder prediction 1 34 - -
Apr4g1631 502 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 68 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1631 Apr-Chr4 18819531 18824202 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Apr4g1631 SWIB 9.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1631 K11650 - gmx:100776562 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1631 4 18819531 18824202 Apr4g1631 4 18819531 18824202 ECH
Apr4g1631 4 18819531 18824202 Apr6g0471 6 5579076 5582141 ECH
Apr4g1631 4 18819531 18824202 Apr6g0471 6 5579076 5582141 PCT