Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1849 ATGCTTTGCATCTTGGTCTCATCCACCATTGCTAATGTCACTTATGATGGCAAGTCACTCTTTATCAATGGAAGACGCGAGATCCTCTTCTCCGGTTCCATCCATTACACCCGAAGCACCCCTGACATGTGGCCAGTTCTTCTTGATAAGGCAAGACATGGAGGTTTGAATGTCATTCAAACTTACGTGTTTTGGAACGCTCACGAGCCAGAGAAAGGCAAGTTCAACTTCGAAGGCAATTATGATCTCGTCAAGTTCATTAAGCTCATTCAATCCAAAAGAATGTTTGTCACCCTCAGGGTTGGCCCTTTCATCCAAGCAGAGTGGAATCATGGAGGACTTCCCTATTGGCTTAGAGAGATTCCTGACATCATTTTCCGCTCTGACAATGAACCCTATAAGCAACACATGCAAGCCTTCGTGTCAAAGATTATACAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCTCAGATCGAGAACGAGTACAACCATATCCAACTTGCTTATGAGGAGAAGGGAGACAGTTATGTCCAGTGGGCTGCAAATATGGCAGTGGCAACGCAAGTTGGTGTTCCATGGATCATGTGCAAGCAGAAGGATGCCCCTGATCCAGTGATCAATGCATGCAATGGAAGACACTGTGGTGATACCTTCTCAGGCCCTAACAAACCATACAAACCAATTATTTGGACTGAGAACTGGACTGCTCAGTACAGAGTATTTGGTGATCCACCATCCCAGAGATCTGCAGAAGATATTGCCTTCTCAGTTGCTCGCTTCTTCTCCAAGAGTGGAAATTTGGTCAACTACTACATGTACCATGGTGGAACAAACTTTGGTAGAACAAGCGCTGCTTTCACCACTACCCGTTATTACGACGAGGCACCTCTTGATGAATACGGTCTGAAGAGAGAACCAAAATGGAGTCACCTGAGGGACGTACACAAGGCTTTGCTCCTATGCAGAAAGGCTATACTTGCTGGCACTTCCACAGTCCAAAAGTTGAACGAATTTCATGAGATTAGAGTGTACGAGAAGATTGGAACTAATGTCTGTGCTGCTTTTCTCACTAACAACCATTCAATCGAGGCAGCCACCATTAACTTCAGAGGGACAGATTATTTCCTCCCACCACATTCCATCAGCGTCCTCCCTGATTGCAAGACTGTGGTCTACAACACCCAAAGTATTGTGTCACAACATAATGCAAGGAACTACGAGAGATCAGCGGTTGCAAACAATCATCAGTGGGAGGTGTTTCAAGAGCCCATTCCAACTACCAAGAAACTGCCAATAAACCAGAAAATCCCTGCAGAGCTTTACAGCTTGCTCAAGGACACCACCGATTATGCTTGGTACACCACAAGCTTCGAGTTGACTCAAGAAGACATGCCAACTAAGGTTGGGGCACTCCCAATTCTTCGTGTTATGAGCCTTGGACATTCATTGATTGCATATGTAAATGGAGACTACGTCGGAACTGCTCATGGCACCCAAGAAGAAAAATCTTTTGAATTCCAACAAGCTGTCAACTTGAGGGTTGGAATCAACTATGTATCCATTTTGGCTAGCATTGTTGGACTACCAGACAGTGGAGCTTACATGGAACACAGGTTCGCAGGACCCAAGTCCGCATCCATCCTTGCTCTCAACAGCGGAACACTTGATCTCACTGGCAACACCTGGAGTCATAAGGTTGGTATCAAGGGTGAGGATATGAGAGTCTTCGCTGAAGATGGATCAACGAGGGCAAAATGGAAGCCATTGGGTGGACCTGTACGCGCTCTCTCTTGGTACAAGACAAGATTTGCCACCCCTGAGGGAACGGGCCCTGTTGCCATCAGAATGACTGGTATGGGGAAGGGAATGATTTGGGTCAACGGTAAAAACATTGGTCGTCACTGGCTGAGCTTTACCTCTCCTTTAGGAAAACCCACTCAATCAGACTACCACATCCCAAGATCATTCCTCAACCCACAAGACAACTTGCTAGTTATATTGGAAGAGGAGAAGACAACTCCAGAAAAGATTGAGATCTTGAATATCAACAGGGATACAATCTGCAGTCACGTTGCAGAGAACGAACCTCCCAATGTGAATTCATGGGTGTCTAGGGACGGAAAGTTCAAACCTGTTGTGGATGTTATTGGACCACAAGCTTCTCTCGAGTGTGAAGATGGCAAAAAGATTGTGGCTGTGGACTTTGCTAGCTTTGGTAACCCCACAGGTTATTGTGGATTCTTCAATATGGGCAACTGCACTGCTGCGGCCACCAAGAGCGTTGTTGAGCAGCAATGCTTGGGGAAAGATTCTTGCTCTGTTTCAATCAACCGTGCAATCTTCAACCAAAATGAGATTGATGCTTGCCCTGCTTTGGTTAAGACACTTGCTGTCCAAGTGAGGTGTGCCTAA 2436 0.4602 MLCILVSSTIANVTYDGKSLFINGRREILFSGSIHYTRSTPDMWPVLLDKARHGGLNVIQTYVFWNAHEPEKGKFNFEGNYDLVKFIKLIQSKRMFVTLRVGPFIQAEWNHGGLPYWLREIPDIIFRSDNEPYKQHMQAFVSKIIQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDSYVQWAANMAVATQVGVPWIMCKQKDAPDPVINACNGRHCGDTFSGPNKPYKPIIWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKSGNLVNYYMYHGGTNFGRTSAAFTTTRYYDEAPLDEYGLKREPKWSHLRDVHKALLLCRKAILAGTSTVQKLNEFHEIRVYEKIGTNVCAAFLTNNHSIEAATINFRGTDYFLPPHSISVLPDCKTVVYNTQSIVSQHNARNYERSAVANNHQWEVFQEPIPTTKKLPINQKIPAELYSLLKDTTDYAWYTTSFELTQEDMPTKVGALPILRVMSLGHSLIAYVNGDYVGTAHGTQEEKSFEFQQAVNLRVGINYVSILASIVGLPDSGAYMEHRFAGPKSASILALNSGTLDLTGNTWSHKVGIKGEDMRVFAEDGSTRAKWKPLGGPVRALSWYKTRFATPEGTGPVAIRMTGMGKGMIWVNGKNIGRHWLSFTSPLGKPTQSDYHIPRSFLNPQDNLLVILEEEKTTPEKIEILNINRDTICSHVAENEPPNVNSWVSRDGKFKPVVDVIGPQASLECEDGKKIVAVDFASFGNPTGYCGFFNMGNCTAAATKSVVEQQCLGKDSCSVSINRAIFNQNEIDACPALVKTLAVQVRCA* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1849 811 Gene3D - 723 811 IPR043159 -
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 23 40 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 44 62 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 99 118 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 156 171 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 237 252 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 274 289 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 293 309 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 602 616 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PRINTS Glycosyl hydrolase family 35 signature 629 645 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 Pfam Beta-sandwich domain in beta galactosidase 334 404 IPR041392 -
Apr5g1849 811 Pfam Galactose binding lectin domain 730 810 IPR000922 GO:0030246
Apr5g1849 811 Gene3D - 573 700 - -
Apr5g1849 811 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 158 170 IPR019801 GO:0004553|GO:0005975
Apr5g1849 811 SUPERFAMILY Galactose-binding domain-like 568 716 IPR008979 -
Apr5g1849 811 Gene3D - 376 545 - -
Apr5g1849 811 Gene3D Glycosidases 10 328 - -
Apr5g1849 811 ProSiteProfiles SUEL-type lectin domain profile. 725 811 IPR000922 GO:0030246
Apr5g1849 811 PANTHER BETA-GALACTOSIDASE RELATED 8 807 IPR001944 GO:0004553|GO:0005975
Apr5g1849 811 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 8 807 - -
Apr5g1849 811 SUPERFAMILY Galactose-binding domain-like 389 549 IPR008979 -
Apr5g1849 811 SUPERFAMILY (Trans)glycosidases 13 329 IPR017853 -
Apr5g1849 811 Pfam Glycosyl hydrolases family 35 19 325 IPR031330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1849 Apr-Chr5 21623483 21627344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1849 13 811 Glycoside Hydrolase AT2G16730 58.354 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1849 - - gmx:100791456 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1849 5 21623483 21627344 Apr5g1849 5 21623483 21627344 ECH
Apr5g1849 5 21623483 21627344 Apr1g0407 1 5067492 5078369 ECH