Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0407 ATGAAACTGTGTTTGCTTTCATTGTTGCTTTTGGTGACTTTCACGGTGGCCTTCTCTGGAAATGTGAGCTACGATGGTCGTTCTCTCATCATCGATGGCCAACGCAAGCTTCTTTTATCTGCTTCCATTCATTATCCTCGAAGCGTTCCTGCGATGTGGCCTGGTCTTGTTCAAACAGCGAAGGAAGGAGGTGTAGATGTTATTGAAACCTATGTTTTCTGGAATGGTCATGAGCTTTCTCCAGGCAATTATTACTTTGGAGGAAGGTTCGATCTGGTCAAGTTTGCAAAGATTGTTCAGCAGGCTGGGATGTACTTGATTCTTAGAATAGGTCCTTTTGTTGCTGCAGAATGGAATTTTGGTGGTGTACCGGTATGGCTACATTATATTCCAGGAACTGTGTTTCGGACATACAATCAGCCTTTCATGTATCATATGCAGAAGTTTACAACATACATTGTGAACCTTATGAAGCAAGAGAAGCTTTTTGCTTCACAAGGGGGCCCAATAATCTTAGCCCAGATAGAAAATGAATATGGATTCTATGAGAACTTTTATAAAGAGGATGGTAAGAAATATGCAATATGGGCTGCAAAGATGGCTGTTTCTCAAAATATAGGCGTCCCTTGGATAATGTGCCAACAATGGGATGCTCCAGATCCTGTGATTGATACATGTAACTCATTCTACTGTGACCAATTTACACCTACTTCTCCAAATAGGCCCAAAATTTGGACTGAGAATTGGCCTGGATGGTTTAAAACTTTTGGGGGCAGAGATCCTCACAGGCCACCAGAAGATGTTGCATTTTCTGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTACATAATTACTACATGTATCATGGAGGAACAAATTTTGGGCGTACAGCAGGTGGTCCATTCATTACGACAAGTTATGACTATGATGCCCCAATAGATGAGTATGGGTTACCTAGGCTTCCAAAATGGGGACATCTTAAGGAACTTCACAGAGCTATCAAGTTATGTGAACATATATTGCTTAATGGTAAATCAGTTAATATTTCCCTTGGCCCTTCTGTGGAGGCTGATGTCTATACTGACTCATCAGGAGCATGTGCTGCCTTTATTTCTAATGTTGATGATAAAAATGACAAGACAGTGGAATTCCGGAATGCATCATATCACTTGCCAGCTTGGTCTGTTAGCATTCTTCCTGATTGCAAGAATGTAGTGTACAACACAGCAAAGGTTACTTCCCAGACAAATATAATTGCAATGATTCCCGAGAATTTAAAGAAATCAGATAAAGGTGCAAATTCTTTCAAATGGGATGTATGGAAGGAGAACCCAGGAATCTGGGGGAAGGCAGACTTTGTCAAAAATGGTTTTGTCGATCTCATCAACACTACCAAAGATACTACTGACTACCTGTGGCATACAACAAGTATACTTGTTAGTGAAAATGAAGATTTCTTAAAGAATGGAAGCAAACCAGTTCTTCAAATAGAATCCAAGGGTCATGCTCTCCATGCTTTTGTGAATCAGGAATATCAAGGTACTGCATCTGGAAATGGTACACATTCCCCATTCACTTTCAGGAATCCCATCTCCCTCAAAGCAGGGAAAAATGAAATTGCTTTATTGTGCTTGACTGTTGGCTTACAGACAGCTGGACCATTCTATGACTTCATTGGGGCAGGACTAACAAGTGTGAAGATTAAGGGACTCAACAATGGGACAATAGACTTGTCTTCTTATGCCTGGACTTACAAGATTGGAGTTCAAGGAGAACATCTAAGGATATACCAGGGAGATGGGTTAAATAATGTGAAGTGGACATCTACTTCAGAACCACCAAAAATGCAGCCATTGACATGGTACAAGACTATTGTGGATGCACCTGGGGATGATCCCGTTGGTTTGGATATGTTGAATATGGGAAAAGGCCTAGCCTGGCTAAATGGAGAAGAAATAGGAAGATATTGGCCTAGGAAAAGTGAATTCAAGAGTGAAGACTGTGTTAAAGAATGTGATTACCGAGGCAAATTCAACCCTGACAAATGTGACACCGGTTGTGGAGAACCTACACAGAAATGGTATCATGTTCCACGATCTTGGTTCAAGCCTTCTGGAAATATTCTTGTTATTTTTGAGGAGAAAGGTGGAGACCCAGAAAAGATTACATTCCTGAGACGTAAAGTATCTGGAGTGTGTGCCCATGTTGCTGAGGATTACCCCTCTGTTGGACTCCTTGCTCAGGCTGAAAATAAAATACAGAATTACAAAAACATTCCTTTTGCCCGATTAACGTGCCCCAGTAACTCTCTTATATCTGCTGTAAAGTTTGCTAGCTTTGGAACCCCCTCTGGATCATGTGGGTCTTACCTTAAGGGAGATTGCCATGATCCGAATTCTAGCATAGTTGTTGAGAAGGCGTGCCTAAACAAAAATGAATGTGTCATAAAATTAAGTAAAGAGAATTTCAAAACCAACTTGTGTCCTGGTTTATCAAGGAAACTTGCAGTGGAAGCGGTATGTAGCTGA 2529 0.4108 MKLCLLSLLLLVTFTVAFSGNVSYDGRSLIIDGQRKLLLSASIHYPRSVPAMWPGLVQTAKEGGVDVIETYVFWNGHELSPGNYYFGGRFDLVKFAKIVQQAGMYLILRIGPFVAAEWNFGGVPVWLHYIPGTVFRTYNQPFMYHMQKFTTYIVNLMKQEKLFASQGGPIILAQIENEYGFYENFYKEDGKKYAIWAAKMAVSQNIGVPWIMCQQWDAPDPVIDTCNSFYCDQFTPTSPNRPKIWTENWPGWFKTFGGRDPHRPPEDVAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLPRLPKWGHLKELHRAIKLCEHILLNGKSVNISLGPSVEADVYTDSSGACAAFISNVDDKNDKTVEFRNASYHLPAWSVSILPDCKNVVYNTAKVTSQTNIIAMIPENLKKSDKGANSFKWDVWKENPGIWGKADFVKNGFVDLINTTKDTTDYLWHTTSILVSENEDFLKNGSKPVLQIESKGHALHAFVNQEYQGTASGNGTHSPFTFRNPISLKAGKNEIALLCLTVGLQTAGPFYDFIGAGLTSVKIKGLNNGTIDLSSYAWTYKIGVQGEHLRIYQGDGLNNVKWTSTSEPPKMQPLTWYKTIVDAPGDDPVGLDMLNMGKGLAWLNGEEIGRYWPRKSEFKSEDCVKECDYRGKFNPDKCDTGCGEPTQKWYHVPRSWFKPSGNILVIFEEKGGDPEKITFLRRKVSGVCAHVAEDYPSVGLLAQAENKIQNYKNIPFARLTCPSNSLISAVKFASFGTPSGSCGSYLKGDCHDPNSSIVVEKACLNKNECVIKLSKENFKTNLCPGLSRKLAVEAVCS* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0407 842 Gene3D Glycosidases 18 337 - -
Apr1g0407 842 SUPERFAMILY (Trans)glycosidases 21 338 IPR017853 -
Apr1g0407 842 SUPERFAMILY Galactose-binding domain-like 396 549 IPR008979 -
Apr1g0407 842 PANTHER BETA-GALACTOSIDASE 10 16 834 - -
Apr1g0407 842 SUPERFAMILY Galactose-binding domain-like 583 742 IPR008979 -
Apr1g0407 842 Pfam Galactose binding lectin domain 764 841 IPR000922 GO:0030246
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 32 49 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 53 71 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 108 127 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 165 180 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 244 259 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 281 296 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 301 317 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 617 631 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 PANTHER BETA-GALACTOSIDASE RELATED 16 834 IPR001944 GO:0004553|GO:0005975
Apr1g0407 842 Gene3D - 595 733 - -
Apr1g0407 842 Pfam Glycosyl hydrolases family 35 28 333 IPR031330 -
Apr1g0407 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 167 179 IPR019801 GO:0004553|GO:0005975
Apr1g0407 842 Pfam Beta-sandwich domain in beta galactosidase 341 412 IPR041392 -
Apr1g0407 842 Gene3D - 750 842 IPR043159 -
Apr1g0407 842 ProSiteProfiles SUEL-type lectin domain profile. 760 842 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0407 Apr-Chr1 5067492 5078369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0407 5 732 Glycoside Hydrolase AT5G63810 71.135 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0407 - - gmx:100815037 1650.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0407 1 5067492 5078369 Apr1g0407 1 5067492 5078369 ECH
Apr5g1849 5 21623483 21627344 Apr1g0407 1 5067492 5078369 ECH