LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1407	ATGGAACGTGCTCGGAGGCTTGCCAACAGTGCCATTCTCAAGAGGCTAATTTGTGAGACCAAGCATTTCGGGAAGAACGATTTTCTCTTGATCCATTCGAGGTGCGTGTCATCGTCACTTTCTCACACTGCTTTCAGAGGCAACAACAACAACAACAACAGGAAGAACCTCTCACGCAATGTTGGGTTTCGATCCATTTCCGTTGAGGCGCTCAAACCCAGCGACACTTTCCCTCGGCGCCATAACTCTGCCACCCAACAAGAACAGAGCAAGATGGCTCAGACATGTGGGTTCCATGATCTTGACTCGCTCATCGATGCCACCGTGCCCAAATCGATTCGTCTGAAGGAGATGAAGTTCGGCACGTTCAACGAGGGGTTAACAGAGGGCGAAATGATCGAGCACATGAAGTGTTTGGCGTCGAAGAACACGTGTTTCAAGTCCTACATTGGAATGGGGTATTACAACACGCACGTGCCACCTGTGATCTTGAGGAACATCATGGAAAACCCAGCATGGTATACTCAGTACACTCCTTACCAGGCTGAGATATCTCAAGGGCGTCTTCAGTCATTGATGAATTATCAAACCATGATCACGGATCTCACTGCTCTACCAATGGCAAATGCTTCTTTGCTCGATGAAGGAACCGCTGCTGCTGAGGCTATGTCTATGTGTAATAATATACAAAAGGGAAAGAAGAAAAGATTTGTTATTGCAAACAATTGTCACCCTCAAACCATTGATGTTTGTAAGACCAGAGCTGCTGGTTTTGGCCTTGAGGTTGTTACTGTGGATGTTAAGGATGTTGATTATGGATCTGGTGATGTTTGTGGGGTTCTTGTTCAGTACCCTGGCACTGAGGGTGAGGCTTTGGATTATGGGGAGTTTGTTAAGGAAGCTCATGCTCATGGAGTTAAGGTTGTTATGGCCACTGATCTGTTGGCTCTGACTGTGTTGAAGCCTCCTGGTGAATTCGGGGTTGATATTGTTGTTGGTTCTGCTCAGAGGTTTGGGGTTCCAATGGGTTATGGAGGTCCTCATGCTGCATTCCTTGCCACGTCACAAGAGTACAAGAGGATGATGCCCGGGAGAATCATTGGTGTCAGTGTTGATTCTTCTGGAAAGCCAGCTTTGAGAATGGCCATGCAAACGAGGGAGCAGCATATACGAAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCTATGTATGCTGTATATCATGGACCTGAAGGCCTTAAAACCATTGCCGAACGGGTTCATGGTCTTGCTGGGGTGCTTGCCCTGGGATTGAAGAAACTTGGGACAGTGGAAGTTCAGGACCTTCCCTTCTTTGACACTGTGAAAATTCAGACTGCCAATGCTCATGCAATTGCTGATGCTGCTTGCAAAAGTGAAATAAATTTGCGGGTTGTTGATGGGAACACTATTACTGTTGCCTTTGATGAAACAACCACATTGGAGGATGTTGATAATCTGTTTAAAGTTTTCGCCGACGGCAAGCCTGTCCCCTTCACAGCTGCGTCTCTTGCACCAGAAGTTCAAACTTCACTTCCTTCTGGACTAATTAGGAAGAGTCCTTATCTGACAAACCCTATCTTTAACACGTACCACACTGAGCATGAGTTGCTCAGGTACATTCATAGGCTACAATCAAAAGATCTTTCATTGTGCCACAGTATGATCCCTCTGGGATCTTGTACAATGAAGCTGAATGCAACCACTGAAATGATGCCTGTGACATGGCCTAGCTTTGCTAACATGCACCCCTTTGCACCAATTGAACAGGCTCAAGGTTATCAGGAAATGTTTGAAAATTTGGGTAACCTGTTGTGTACCATCACTGGATTTGATTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCCGGAGAATATGCTGGGCTGATGGTTATTCGTGCATATCATTTGGCCAGAGGAGACCACCACCGCAACGTGTGTATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTATCTGTTGGAACTGATGCCAAGGGAAACATTAATATTGACGAGTTGAGGAATGCTGCTGAAACAAATAAGGACAATTTATCTGCACTTATGGTTACATATCCTTCAACCCATGGTGTTTACGAAGAAGGTATTGATGAGATATGCAAGATTATTCATGATAATGGAGGTCAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATAGGAGCAGATGTATGCCATCTGAATCTCCATAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCCGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCCACTGGTGGCATTCCTGCCCCTGAGAATTCCCAGCCACTTGGTACCATTTCTGCTGCACCATGGGGCTCAGCACTGATATTGCCTATTTCATACACTTACATAGCCATGATGGGTTCTAAAGGACTCACGGAAGCATCAAAGATAGCCATTTTGAATGCAAATTATATGGCAAAACGATTGGAGAATTATTACCCTGTACTTTTCCGTGGAGTCAACGGAACAGTTGCTCATGAATTCATTATTGACTTGAGAGGCTTCAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCAAAGCGCCTTATGGATTATGGGTTTCATGGACCCACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGACAAGAAATTGCTGAAATTGAGAAAGGAAAGGCTGACATCAACAACAACGTACTTAAGGGAGCCCCTCACCCACCTTCGCTACTCATGGAAGATGCATGGACCAAACCATACTCCCGGGAATATGCAGCCTTCCCAGCTTCCTGGCTCCGCGTTTCTAAGTTTTGGCCTTCCACTGGACGTATTGATAATGTGTACGGTGACCGCAACCTCGTTTGCACGCTTCTCCCAGTATCACAGATTGCTGAAGAACAAGCTGCTGCCACTGCCTAA	3114	0.4602	MERARRLANSAILKRLICETKHFGKNDFLLIHSRCVSSSLSHTAFRGNNNNNNRKNLSRNVGFRSISVEALKPSDTFPRRHNSATQQEQSKMAQTCGFHDLDSLIDATVPKSIRLKEMKFGTFNEGLTEGEMIEHMKCLASKNTCFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLQSLMNYQTMITDLTALPMANASLLDEGTAAAEAMSMCNNIQKGKKKRFVIANNCHPQTIDVCKTRAAGFGLEVVTVDVKDVDYGSGDVCGVLVQYPGTEGEALDYGEFVKEAHAHGVKVVMATDLLALTVLKPPGEFGVDIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAERVHGLAGVLALGLKKLGTVEVQDLPFFDTVKIQTANAHAIADAACKSEINLRVVDGNTITVAFDETTTLEDVDNLFKVFADGKPVPFTAASLAPEVQTSLPSGLIRKSPYLTNPIFNTYHTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANMHPFAPIEQAQGYQEMFENLGNLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIDELRNAAETNKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENSQPLGTISAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGKADINNNVLKGAPHPPSLLMEDAWTKPYSREYAAFPASWLRVSKFWPSTGRIDNVYGDRNLVCTLLPVSQIAEEQAAATA*	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1407	1037	PANTHER	GLYCINE CLEAVAGE SYSTEM P PROTEIN	1	1037	-	-
	Apr5g1407	1037	Hamap	Glycine dehydrogenase (decarboxylating) [gcvP].	71	1028	IPR003437	GO:0004375\|GO:0006544
	Apr5g1407	1037	PANTHER	GLYCINE DEHYDROGENASE, DECARBOXYLATING	1	1037	IPR020581	GO:0004375\|GO:0006546
	Apr5g1407	1037	TIGRFAM	gcvP: glycine dehydrogenase	80	1021	IPR003437	GO:0004375\|GO:0006544
	Apr5g1407	1037	Gene3D	Aspartate Aminotransferase, domain 1	836	975	IPR015422	GO:0003824
	Apr5g1407	1037	Pfam	Glycine cleavage system P-protein	80	506	IPR020581	GO:0004375\|GO:0006546
	Apr5g1407	1037	Pfam	Glycine cleavage system P-protein	533	799	IPR020581	GO:0004375\|GO:0006546
	Apr5g1407	1037	SUPERFAMILY	PLP-dependent transferases	80	507	IPR015424	-
	Apr5g1407	1037	Gene3D	-	160	420	IPR015421	GO:0003824
	Apr5g1407	1037	Gene3D	-	588	825	IPR015421	GO:0003824
	Apr5g1407	1037	SUPERFAMILY	PLP-dependent transferases	542	1022	IPR015424	-
	Apr5g1407	1037	CDD	GDC-P	549	944	IPR020581	GO:0004375\|GO:0006546
	Apr5g1407	1037	Gene3D	Aspartate Aminotransferase, domain 1	149	502	IPR015422	GO:0003824
	Apr5g1407	1037	CDD	GDC-P	129	506	IPR020581	GO:0004375\|GO:0006546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1407	Apr-Chr5	18179859	18185562	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1407	K00281		-	gmx:100795673	1855.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g0303	9	3969006	3975849	Apr5g1407	5	18179859	18185562	PCT