Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1276 ATGGCATTCATCAAACTCCTCCACATCATTTTGTTGCTTGCACTCCTTCCTTACTCAACATTCACCCACGCTTGTGCACTAAGACGGCCATCTCCACGAAGCCCACCACCGCCTCCACGAAGCCCACCACCGCCTCCACGAAGCCCACCACCACCTCCACGAAGCCCACCACCCCCACGAAGCCCACCACCACCTCCACGAAGCCCACCACCGCCTCCACGAAGCCCACCACCCCCACTAAGACCCCCACCCCCGCAAAGCCCACCACCATCATGCAGCTTTAGACCATCGCCACCCTCATCAGAAGGAAAATGCCCCAAGGACACCTTAAAGTTTGGAGTTTGTGCTTTAGGACATGGTCCCATGATTTTTGAAACTCCTCCTTCAAGCAAATGTTGCACGTTGTTTATGGATTTGGCCGACTTCGAGGCCGCAGTTTGCCTTTGCACTGCTATTAAAGACAACGTGCTTGGAACCGACGTGGATATACCCATCACCCTCAACTATATTCTAAGTGCTTGTCAAAAAGTTGTCCTTCCTGGTTTCCAGTGTCCCTAG 558 0.5341 MAFIKLLHIILLLALLPYSTFTHACALRRPSPRSPPPPPRSPPPPPRSPPPPPRSPPPPRSPPPPPRSPPPPPRSPPPPLRPPPPQSPPPSCSFRPSPPSSEGKCPKDTLKFGVCALGHGPMIFETPPSSKCCTLFMDLADFEAAVCLCTAIKDNVLGTDVDIPITLNYILSACQKVVLPGFQCP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1276 185 Pfam Hydrophobic seed protein 105 185 IPR027923 -
Apr5g1276 185 Gene3D - 104 185 IPR036312 -
Apr5g1276 185 PANTHER - 1 184 - -
Apr5g1276 185 PANTHER PROLINE-RICH PROTEIN DC2.15 1 184 - -
Apr5g1276 185 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 108 185 IPR036312 -
Apr5g1276 185 MobiDBLite consensus disorder prediction 28 104 - -
Apr5g1276 185 MobiDBLite consensus disorder prediction 30 96 - -
Apr5g1276 185 PRINTS Proline rich extensin signature 30 46 - -
Apr5g1276 185 PRINTS Proline rich extensin signature 50 62 - -
Apr5g1276 185 PRINTS Proline rich extensin signature 67 88 - -
Apr5g1276 185 CDD HPS_like 103 184 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1276 Apr-Chr5 17089819 17090543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1276 96 185 Acyl Lipid Metabolism Gene Families AT4G22490 35.106 6.37e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1276 - - aprc:113866217 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0183 9 2362417 2365323 Apr5g1276 5 17089819 17090543 PCT