Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1215 ATGCTCAAGCAATTCCTCAGTAAACTGCCTCGTAAGGCATCGAAACCCGACCCGGACGAGTCAAGCCGAGGCGACTCGTCGCGCTCGAGCTCCTCCCGGGATGAATCGCCGCGCGCCGCCGGGAGAAATCACAGGTCTCACGGCAGTGTCGGTGGCAGTTCCAACGCTGCGAAACGAACTTCCTCGTCGGCGGTTTTCCCGGCAAGCACGGTGTCGGTGATTGAACCGTTGGTGCCGTTTAAGGATGTTCCAAACTCGGAGAAGATGAACCTGTTCGTGAGCAAGTTGAGCCTTTGTTGCGTGACGTTCGATTTCACGGACCCTGGTAAGAACACGGTGGAGAAAGAGGTGAAAAGAAGAACCTTGGTTGAAGTGGTTGATTTTGTGGCTTCTTGTGGATCTATGAGGTTTGGTGAACCTGCTATTCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTAGAGTTTTCCCGCCAAATTACAGGTCTAACCGTGGCGGTGAGAATGATGATGATGAGCCAGCGTTTGACCCTGCTTGGCCCCACTTGCAACTTGTCTATGAATTGTTTCTTAAGTTTATCACTTCTTCGTGCCTTGATGCTAAGGTTGCAAAGAAGTATATTGACCATTCGTTTATTTCAAGGTTGTTGGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGACTGTTTGAAGACAATTATGCATAGGGTTTATGGGAAGTTCATGGTGCATAGACCCTATATAAGAAAATCTATTAACAACTTGTTTTATAGGTTTGTGTTTGAGACCGAGAAACACAATGGTATTGCTGAGTTGTTGGAGATTTTTGGGAGCATAATAAGTGGATTTGCTTTGCCTTTGAAAGAGGAACACAAAATCTTCTTGTGGAGAGTTTTGGTCCCCTTGCACAAGCCTAAGTCTATGGGGGTCTATTTCCAGCAATTGTCGTACTGTGTTACGCAGTTTATAGAGAAGGAGCCCAAGTTGGCGAGCATCGTTATAAGGGGTTTGTTGAAGTATTGGCCAATAACAAATTGTCAGAAAGAGGTGATGTTCCTGGGTGAACTGGAAGAAATTTTGGAAACAATCAACATGGTTGAGTTCCAGAGGGTCATGGTCCCCTTATTTTGGCGAGTAGGATGCTGCATTAACAGTTTACACTTTCAGGTAGCTGAAAGGGCTCTTTTCTTGTGGAACAATGACCATATTGTCAACTTGATTGCTCACAACCGTCAGGTGATCCTGCCCATCGTTTTTCCAGCTTTAGAGAAGAATTCTCAAGGCCACTGGAACCAGGCAGTGCTCAACTTAACTCATAATGTTAGAAAGATGTTCGTGGAGATGGACGAGAAGCTGTTCCTAACGTGTCATTCGCAGTTTATAGACGAAGAAGCCATGCTAAACGCAGCAGCTGAGAAGCGAAAGGAAGCCTGGAAACAACTAGAGCATGCAGCCAGTCTTCAGCCGGTGATTGGAAATACCCCAGTTTTAGTGTCTCCAATATGA 1509 0.4586 MLKQFLSKLPRKASKPDPDESSRGDSSRSSSSRDESPRAAGRNHRSHGSVGGSSNAAKRTSSSAVFPASTVSVIEPLVPFKDVPNSEKMNLFVSKLSLCCVTFDFTDPGKNTVEKEVKRRTLVEVVDFVASCGSMRFGEPAILAMCRMCAINLFRVFPPNYRSNRGGENDDDEPAFDPAWPHLQLVYELFLKFITSSCLDAKVAKKYIDHSFISRLLELFDSEDPRERDCLKTIMHRVYGKFMVHRPYIRKSINNLFYRFVFETEKHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLVPLHKPKSMGVYFQQLSYCVTQFIEKEPKLASIVIRGLLKYWPITNCQKEVMFLGELEEILETINMVEFQRVMVPLFWRVGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIVFPALEKNSQGHWNQAVLNLTHNVRKMFVEMDEKLFLTCHSQFIDEEAMLNAAAEKRKEAWKQLEHAASLQPVIGNTPVLVSPI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1215 502 SUPERFAMILY ARM repeat 90 482 IPR016024 -
Apr5g1215 502 MobiDBLite consensus disorder prediction 10 42 - -
Apr5g1215 502 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 500 - -
Apr5g1215 502 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 500 IPR002554 GO:0000159|GO:0007165|GO:0019888
Apr5g1215 502 MobiDBLite consensus disorder prediction 47 61 - -
Apr5g1215 502 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 79 486 IPR002554 GO:0000159|GO:0007165|GO:0019888
Apr5g1215 502 Gene3D - 84 485 IPR011989 -
Apr5g1215 502 MobiDBLite consensus disorder prediction 1 61 - -
Apr5g1215 502 PIRSF PP2A_B56 4 498 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1215 Apr-Chr5 16610303 16613429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1215 K11584 - gmx:100808283 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1215 5 16610303 16613429 Apr5g1215 5 16610303 16613429 ECH
Apr5g1215 5 16610303 16613429 Apr9g0144 9 1714591 1718440 ECH
Apr9g0144 9 1714591 1718440 Apr5g1215 5 16610303 16613429 PCT