Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1196 ATGGAGTTAATGGGAGGTGGAAAGTTTAGTAGATGTGTTGTTCTGTTGTTCTTGAATGTTCTGTTAGTGGGAGTGAGTGGGATTGGTGTTAATTGGGGCACACAGTCCACACACCCTTTGTCACCATCTAAGGTGGTGAAAATGCTGAAAGACAATGGCATTCAAAAGGTTAAACTTTTTGATGCTGATCCTGGTATCTTAAATGCTCTCAAGAAGTCTGGGATACAGGTCATGGTGGGGATTCCAAATGACATGCTTTATACCCTGGCTAACAGTGTGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCTGCACATGTTTCTTCTGGTGGAGTAGACATCAGGTACGTTGCAGTGGGGAATGAACCATTCTTGTCAACGTACAATGGTACATACGAAGCCACAACTCTTCCAGCTCTTCAAAACATCCAGGCAGCTCTAACGAAATCCGGTTTGAGCAACCGTGTCAAAGTCACCGTTCCCTTAAACGCCGACGTGTACCAAAGCTCGTCTGAAAAGCCATCAGACGGCGGTTTCAGGCCAAACATCAACAATGTCATGCTGCAGATTGTCAAGTTCTTGAACGACAATGGAGCTCCCTTTACTGTGAACATCTACCCCTTTATAAGTCTCTACTCTGACCCCAATTTTCCTGTTGACTATGCTTTTTTCAGTGGCTATCAGCCTGCTATAAACGACAATGGAAGGAGCTATGACAACGTGTTTGATGCCAACCATGATACTTTAGTATGGGCACTACAAAAGAATGGGTTTGGAAACTTGCCTATAATTGTAGGGGAAATTGGATGGCCCACAGATGGAGACAGAAATGCAAATATTCAATATGCACAACGTTTTAACCAAGGTTTTATGTCACGTTATATGTCTGGAAAGGGTACTCCGATGAGGCCTGGTCCTATAGATGCATACTTATTTAGTCTCATAGATGAAGATAATAAGAGCATTCAGCCAGGGAACTTTGAACGTCATTGGGGCATGTTTTACTTTGATGGGCAACCCAAATATCAACTTAATCTTGGGTCAGCCCGAGGGAATGGGTTAGTGGCAGCTAGTGGTGTTGATCATTTGGCTAAAAAGTGGTGTGTTTTGAAACCCTCAGCAAACCTTAATGATGACCAAGTGGCACCTAGTGTAGCCTACGCTTGTCAAAATGCTGATTGCACTAGTCTTGGGTATGGGACTTCATGTGACAAGTTAGATGTTCACGGTAACATTTCTTATGCCTTTAATAGCTACTACCAAATTAATGACCAAATGGACAGTGCCTGCAAATTCCCTGGCCTTTCTATGGTCACTGACAAAGATCCTTCGGTTGGAGATTGCAAATTCAAAATCATGATCCAGACAGATTCTGCAATGCTCAATGGGAGACCTGGTTTTCTAAGAATAGTGCTCTGTGTTTTTGTCTTTTTACTATTCCGTAATCTTTCGTTTTGA 1461 0.4264 MELMGGGKFSRCVVLLFLNVLLVGVSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADPGILNALKKSGIQVMVGIPNDMLYTLANSVQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTYEATTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGGFRPNINNVMLQIVKFLNDNGAPFTVNIYPFISLYSDPNFPVDYAFFSGYQPAINDNGRSYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANIQYAQRFNQGFMSRYMSGKGTPMRPGPIDAYLFSLIDEDNKSIQPGNFERHWGMFYFDGQPKYQLNLGSARGNGLVAASGVDHLAKKWCVLKPSANLNDDQVAPSVAYACQNADCTSLGYGTSCDKLDVHGNISYAFNSYYQINDQMDSACKFPGLSMVTDKDPSVGDCKFKIMIQTDSAMLNGRPGFLRIVLCVFVFLLFRNLSF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1196 486 Pfam Glycosyl hydrolases family 17 28 346 IPR000490 GO:0004553|GO:0005975
Apr5g1196 486 SMART X8_cls 367 451 IPR012946 -
Apr5g1196 486 Gene3D Glycosidases 27 353 - -
Apr5g1196 486 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Apr5g1196 486 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 14 460 - -
Apr5g1196 486 Pfam X8 domain 367 437 IPR012946 -
Apr5g1196 486 Gene3D - 363 461 - -
Apr5g1196 486 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 14 460 IPR044965 GO:0004553|GO:0005975
Apr5g1196 486 SUPERFAMILY (Trans)glycosidases 28 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1196 Apr-Chr5 16407288 16411376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1196 13 479 Glycoside Hydrolase AT4G31140 68.421 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1196 K19893 - gmx:100796552 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1196 5 16407288 16411376 Apr9g0130 9 1539590 1543958 PCT