Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1142 ATGGTAGAAGCAGGGGAGGGGGATGTTCTTGAATTCAAGTGGGGGAAAAAGAGAGGAATCGGTGGTAAAAAAAAGGATGTGCGTTTTTACGAATCATTTACCTACGATGATGTGGATTACACTCTTTTTGACTCTGTGTTTCTTCACATGGATGGTGAACCCGAGCCTTTTATCGGTAAAATCATCAAAATATGGGAAAATGCTGATAAGAGCAAGAAAGTTAAGATTCTGTGGTATTTTCGTCCGTGTGAGATTCGTAACTTCTTGGAAGGAATCGAGACACTTGACAATGAGTTGTTTTTGGCATGTGGTGAAGGCGTAGGCCTTGCAAACGTTAACCCTCTGGAAGCTATTGCTGGCAAATGCAATGTCGTTTCCATTTCTAAGGACAGTAGGAATCCACAACCATCAGATAAAGCCATTCAAATGGCTGACTTTGTATTCTATCGTTTCTTTGATGTTGGGAAGTGTCAAATATTGGATAAGATAGGTGATACTATTGCTGGAATTGAAGTTAAAAATATTTTTAACAACTTAGATAGTCAAAAGCTTGTTGGTCTTGTGAAACATGGTTTAGACATGACAAAAGTAAGTGGGAACCACGCAAGTGATGATGCAGAAACAATGGCTCTTTTAAGTGAAGAAAAGAGTCGGCATTTGATTGAAAAACCAAATGGCAATTGTATTCTGTTTGACACATTAGTTAGAGAGAATGATGATTCTAAGTCATTGTTGGGAAAAAAACCTACCTCTAGTGTTGGTTTAAAGGAAGCAAGAAAATTGAAGAATTCGCTGCACACTATGTCCAACGACAAGACCATGCCTCAAGATACAGTCAAAGCAAATGGGGCTTGTAAAGCTTCTTTGGTTAAACCAAAATCATCTACTAAATTAACACATGGTTCTAGAGCTAGTTTGGAAATGAGGGAAATGGCTAAAATGGATGATCAATGTAGAAATGTTGCTATCGACAAGAACATTTTGAGGTCTCGAGCTGATTCGCAAAAAGATGATCACAAGGATGTTGATATCCCTATTAGAAAAATGAACGAGGGACTAATGGAGGACAAGGCTTTTGAGAACGAAAAAAGTGGTGGTTCTTGTAAGGTTTCTAGTACAAAGAAGAATAATGTGAAAAATCGAAGGCTTGTTACCTATGACGATGACGATAACGATGATGTGGAAAGTATAGCTCCATCTTCATCAAAGGATAGATGTAAACGAGCAAAGGATTCTTGTGATGTCGAGGAAATTCCTTCAAAAAAGTCAAAGATTGACAAGAAGCCAATAAAACTTTCTGATGACAAGTTGTGCAAAGAATCTTCTACAAATTCATTGAATGTGGAACACGAGCTAGATTTCCGTGCAATGGAAGTTACTCGAAGACCAGATGTTGATAGAAGCAAATGGTTTAAGGGATTTCCTTGGGAAGAAAGAATGAAAACTGCTTATGAGCAAGGAAAACTTGTGCTACTTCAAAACTTGGATCCATCTTTAACCTCATCAGAAGTACAGGATATTATTTGGCATGGGTTTAGAGAAAGTTGCACTGCAAAGGTGATCCAGAAGACTGCTTATTCAAGTCCTCATTCTGGTCAAGCTTTTGTTATATTTAAAGGAAAGGAAGCAGCAGAGTTGGTTGTGAGAAGATTAGATGAGGGCTGTTTCTTAATGTCTAATGGGCGGCCTCTTGTTGGAAGCATTGGAGTTCCTTGGTTTCCAGAAAAAAAACCAACATTTTATGGTCATCATGTTGTCGATAAACTTCGAATGATGCAAATGCAGCGTGAGATGAAAGATGCTGTATCTACATCACATTGTTCTCAGCCCAACAATATTGAATATGATATGGCCGTAGAGTGGTGCTTACTTGAAGAAAGAGCAAACAAATCATGGAGAAAATTGTCTCAGCGACAAGGTGAGGAGTTGAGTAAACTCAAAGCTAAACTGAAGTCTTTAACTGATCTCAAATGA 1974 0.383 MVEAGEGDVLEFKWGKKRGIGGKKKDVRFYESFTYDDVDYTLFDSVFLHMDGEPEPFIGKIIKIWENADKSKKVKILWYFRPCEIRNFLEGIETLDNELFLACGEGVGLANVNPLEAIAGKCNVVSISKDSRNPQPSDKAIQMADFVFYRFFDVGKCQILDKIGDTIAGIEVKNIFNNLDSQKLVGLVKHGLDMTKVSGNHASDDAETMALLSEEKSRHLIEKPNGNCILFDTLVRENDDSKSLLGKKPTSSVGLKEARKLKNSLHTMSNDKTMPQDTVKANGACKASLVKPKSSTKLTHGSRASLEMREMAKMDDQCRNVAIDKNILRSRADSQKDDHKDVDIPIRKMNEGLMEDKAFENEKSGGSCKVSSTKKNNVKNRRLVTYDDDDNDDVESIAPSSSKDRCKRAKDSCDVEEIPSKKSKIDKKPIKLSDDKLCKESSTNSLNVEHELDFRAMEVTRRPDVDRSKWFKGFPWEERMKTAYEQGKLVLLQNLDPSLTSSEVQDIIWHGFRESCTAKVIQKTAYSSPHSGQAFVIFKGKEAAELVVRRLDEGCFLMSNGRPLVGSIGVPWFPEKKPTFYGHHVVDKLRMMQMQREMKDAVSTSHCSQPNNIEYDMAVEWCLLEERANKSWRKLSQRQGEELSKLKAKLKSLTDLK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1142 657 Coils Coil 636 656 - -
Apr5g1142 657 CDD RRM_SF 490 564 - -
Apr5g1142 657 MobiDBLite consensus disorder prediction 381 405 - -
Apr5g1142 657 PANTHER PROTEIN ANTI-SILENCING 1 1 652 - -
Apr5g1142 657 Pfam BAH domain 44 129 IPR001025 GO:0003682
Apr5g1142 657 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682
Apr5g1142 657 PANTHER PROTEIN ANTI-SILENCING 1 1 652 - -
Apr5g1142 657 SUPERFAMILY RNA-binding domain, RBD 479 565 IPR035979 GO:0003676
Apr5g1142 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 488 564 IPR000504 GO:0003723
Apr5g1142 657 Gene3D - 9 162 IPR043151 -
Apr5g1142 657 SMART BAH_4 38 164 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1142 Apr-Chr5 16006751 16020961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1142 - - aprc:113865076 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1142 5 16006751 16020961 Apr5g1142 5 16006751 16020961 ECH
Apr5g1142 5 16006751 16020961 Apr9g0060 9 805933 814401 ECH