Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1084 ATGATGTGGCTCAATAGACACAGGCACAGGCACAGCTACAGGACGCTGTCACCACCTACAAAAAGATTACTATTGGTGTTAGGTGGAAGTTGTGGAGAAGAAAAGTTGTTGGGAGTGATGTCGAGCACATTGAGGAACGGTGGTGAGGTTTCAGTGACGGAGGATTATAGCAATGGTCATGGTGGGGGTGTTAGAGACTTGTATGGTGAGGATAGTGCCACGGAGGACCAGCTTATCACACCATGGACTTTCTCTGTGGCCAGTGGCTACACTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTCACTGAGAAAGAGCGAGATGCTCATTACCTGCGTGGCCTCTTGCCTCCCTCTGTGTTTACACAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAATATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTCTGATTGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACAGTTGGAGAAGCATGCCAGAAATATGGAAGTATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAAGTACTGAAAAACTGGCCAGAGAAGACCATTCAAGTTATTGTTGTGACTGATGGTGAGCGCATATTGGGACTTGGAGATCTTGGTTGCCAGGGAATGGGGATTCCAGTTGGGAAACTCTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCATCATGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAATTTGCTGAATGATGAGTTTTACATTGGACTAAAGCATAAGAGGGCCACTGGGAAGGAATATGAGGAGCTTCTAGATGAGTTTATGCGTGCAGTTAAGCAGAACTATGGGGAGAAAGTTCTCATACAGTTTGAAGATTTTGCGAATCATAATGCATTTGATCTGCTGGCAAAATACAGCTCATCTCATCTTGTTTTTAATGACGATATTCAGGGTACTGCTTCCGTGGTATTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCATACCTTCTTATTTCTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATCTCAAAGCAGACAAAGGCTCCAGTGGAAGAGACCCGCAAGAAGATCTGGCTTGTGGACTCAAAGGGACTTATTGTTAGCTCTCGTTTGGAATCACTCCAGCACTTCAAAAAGCCTTGGGCCCATGAACATGAACCTGTAAAGGGGCTACTTGATGCTGTTAAGGCAATCAAACCAACCGTATTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAGCCATGGCATCATTGAATGAGAAACCACTCATTCTTGCTCTCTCCAATCCAACGTCCCAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATCTTTGCCAGTGGAAGCCCATTTGATCCTGTTGAGTATGAAGGAAAAGTTTTCGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTCGGTTTGGGTTTGATAATCTCTGGTGCAATCCGCGTGCGCGATGAGATGCTCTTGGCAGCCTCTGAGGCTTTGGCTGCACAAGTATCACAGGAGAACTATGACAAGGGACTGATTTACCCTCCATTCTCAAACATTAGAAAGATATCGGCTCATATTGCTGCTAATGTCGCAGCTAAGGTTTACGAAATGGGTCTGGCTTCTCATCTACCTCGACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACAGAAGCTACCGTTGA 1887 0.4557 MMWLNRHRHRHSYRTLSPPTKRLLLVLGGSCGEEKLLGVMSSTLRNGGEVSVTEDYSNGHGGGVRDLYGEDSATEDQLITPWTFSVASGYTLLRDPRYNKGLAFTEKERDAHYLRGLLPPSVFTQELQEKRLMHNLRQYEVPLHRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNENLLNDEFYIGLKHKRATGKEYEELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFSNIRKISAHIAANVAAKVYEMGLASHLPRPKDLVKYAESCMYSPGYRSYR* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1084 628 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 344 627 IPR036291 -
Apr5g1084 628 SMART malic_2 153 334 IPR012301 GO:0004471
Apr5g1084 628 PANTHER MALIC ENZYME 16 628 - -
Apr5g1084 628 PANTHER MALIC ENZYME-RELATED 16 628 - -
Apr5g1084 628 ProSitePatterns Malic enzymes signature. 340 356 IPR015884 GO:0004471
Apr5g1084 628 Gene3D - 87 341 IPR037062 GO:0004471
Apr5g1084 628 Pfam Malic enzyme, N-terminal domain 153 333 IPR012301 GO:0004471
Apr5g1084 628 Gene3D - 342 628 - -
Apr5g1084 628 SMART Malic_M_2 344 597 IPR012302 GO:0051287
Apr5g1084 628 PRINTS Malic enzyme signature 159 183 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 PRINTS Malic enzyme signature 219 248 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 PRINTS Malic enzyme signature 255 277 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 PRINTS Malic enzyme signature 315 333 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 PRINTS Malic enzyme signature 340 356 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 PRINTS Malic enzyme signature 371 387 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 PRINTS Malic enzyme signature 474 490 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 68 343 IPR046346 -
Apr5g1084 628 PIRSF ME 58 628 IPR001891 GO:0004470|GO:0004471
Apr5g1084 628 CDD NAD_bind_1_malic_enz 344 622 - -
Apr5g1084 628 Pfam Malic enzyme, NAD binding domain 344 595 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1084 Apr-Chr5 15485855 15490788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1084 K00029 - gmx:100801564 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1084 5 15485855 15490788 Apr5g1084 5 15485855 15490788 ECH
Apr2g1384 2 19948824 19954132 Apr5g1084 5 15485855 15490788 ECH
Apr2g2475 2 29163230 29169350 Apr5g1084 5 15485855 15490788 ECH
Apr10g0936 10 21905206 21910631 Apr5g1084 5 15485855 15490788 ECH