Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1000 ATGGTTACGGAGCTCAGCGAGAAAGAAGCAATGATACGCGACGTCGCATTGCAAATCGTTCTCTTCCTTCTCATGATTTTCATGTACCTCGCCATGCACGGCATTCCCCAAAAACTCTTCGCCAAACTCCGTTTCCGAAACCGAACCTCCCTCCGAGCCAAACGTCACTTCGTCAAAGGCGCTCAGCTCCTCGACCAAGCCAGAAGAACAACACCATCCAATTCCACCTCCCTCGCCAAACAAGCCGAAGCCGAAGCCGATCAAGCCATCGCTCTGGACCCCAAAGACGCCGCCTCTTACCTCTTAAAAGCCATGGCTCTCATCCTCCAGGGCTTCCGTACTTCCGCCCTCGACGCGCTCGACGCCGCGTTGTCTCCACTCGCCGCTAAGTCTCTCGCCGACGCCGAGAGGGGCGACGCGCTTCTCAAGAGAGCCGAGTTGAAAATCGCCTTGAATCAACCCGGCCACGTTGACTCGGCCCTGGCCGATTTGACGGAGTCGGTGAAGCTGAGTCCGAAAAACGCTAAGGCGTGGTGTATGTTAGGGGAATGCTACGAAGGAAACAAGATGGAAGAAGAAGCCATTAAGGCTTACAAGGAGGCTCTGGAAGTGGAGCCACGCTTGAGTTTGGCTCAAGATGCGCTCAACAGGTTGGCTTCATCATGA 666 0.5511 MVTELSEKEAMIRDVALQIVLFLLMIFMYLAMHGIPQKLFAKLRFRNRTSLRAKRHFVKGAQLLDQARRTTPSNSTSLAKQAEAEADQAIALDPKDAASYLLKAMALILQGFRTSALDALDAALSPLAAKSLADAERGDALLKRAELKIALNQPGHVDSALADLTESVKLSPKNAKAWCMLGECYEGNKMEEEAIKAYKEALEVEPRLSLAQDALNRLASS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1000 221 SUPERFAMILY TPR-like 87 215 IPR011990 GO:0005515
Apr5g1000 221 Pfam Tetratricopeptide repeat 175 207 IPR001440 GO:0005515
Apr5g1000 221 PANTHER - 12 218 - -
Apr5g1000 221 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 12 218 - -
Apr5g1000 221 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Apr5g1000 221 SMART tpr_5 175 208 IPR019734 GO:0005515
Apr5g1000 221 SMART tpr_5 138 174 IPR019734 GO:0005515
Apr5g1000 221 Gene3D Tetratricopeptide repeat domain 31 221 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1000 Apr-Chr5 14628887 14630023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1000 - - gmx:100783725 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1000 5 14628887 14630023 Apr5g1000 5 14628887 14630023 ECH
Apr9g1010 9 19268842 19269947 Apr5g1000 5 14628887 14630023 PCT