Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0978 ATGGCATTCTCAAATGCATTGGTTTTGGGCTTATTGCTAGCCATCAACATGGCTCTCCCAACCCTCTCAACCGTCTACACTGTGGGAGATACTTCAGGTTGGGCAATTGGTGCTGATTATAGCACTTGGACTAGTGACAAGGCATTTTCAGTGGGTGATAGTCTCGTGTTCAATTATGGATCTGGGCACACTGTGGATGAGGTTAAAGAGAGTGACTATAAATCATGCACTGCTGGGAATTCAATTAGTACAGACAGCAGTGGTGCCACCACCATTCCACTCAAAACTGCTGGCACTCATTACTTCATATGTGCAATTCCTGGACATTGTGCTGGTGGCATGAAACTTGCTGTTACTGTCAAAGCAGGAAAAGCCACTGCCCCTTCTACAACGCCAGCAACTGGGAAGGGTTCGCCTTCTGATGGCAGTGGCACCACCGCCACACCCGCCGCCACCACCACCACCACTACTCCTACTACTGCCACTAAATCAAACTCGTCTTCTGCGAGTAGTCTCTCACCAATTGTTGCTATGGTGATTGTTTCATGGATCTCTTACTATGTTTGGCGTATGGTATGA 579 0.4784 MAFSNALVLGLLLAINMALPTLSTVYTVGDTSGWAIGADYSTWTSDKAFSVGDSLVFNYGSGHTVDEVKESDYKSCTAGNSISTDSSGATTIPLKTAGTHYFICAIPGHCAGGMKLAVTVKAGKATAPSTTPATGKGSPSDGSGTTATPAATTTTTTPTTATKSNSSSASSLSPIVAMVIVSWISYYVWRMV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0978 192 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Apr5g0978 192 MobiDBLite consensus disorder prediction 126 169 - -
Apr5g0978 192 Gene3D - 22 127 IPR008972 -
Apr5g0978 192 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Apr5g0978 192 PANTHER BLUE COPPER PROTEIN 7 185 IPR039391 GO:0009055
Apr5g0978 192 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Apr5g0978 192 CDD Phytocyanin 24 120 - -
Apr5g0978 192 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Apr5g0978 192 PANTHER BLUE COPPER PROTEIN-LIKE 7 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0978 Apr-Chr5 14360817 14362070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0978 31 120 Miscellaneous Gene Families AT1G22480 70.000 3.67e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0978 - - gmx:100306522 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0978 5 14360817 14362070 Apr5g0978 5 14360817 14362070 ECH
Apr9g0959 9 18374173 18381937 Apr5g0978 5 14360817 14362070 PCT