Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0537 ATGACATCGAAACCATTCAAACCAAGCCGGTTATCTCAGTCAGCAAGTTCTGATGCACCTGAAGGCCAGAAGCCTCCTTTGCCTCCAACTGTAACATTTGGAAGAAGAACTTCCTCAGGTCGCTACATCAGTTACTCCAGAGATGATCTTGATAGTGAGTTAGGGAGTAATGACTTCATGAATTATACAGTGCATTTGCCACCAACCCCTGATAACCAACCTATGGATCCATCGATCTCACAAAAAGTTGAGGAGCAATATGTGTCAAGTTCACTTTTCACAGGAGGATTCAACAGTGTTACTCGAGCCCATCTAATGGATAAGGTGATAGAATCTGAAGCAAACCATCCACAGATGGCCGGTGCAAAAGGGTCTTCATGTGCAATTCCTGGTTGTGATTGCAAGGTGATGAGTGATGAACGGGGTGTGGATATTCTTCCTTGTGAATGTGATTTTAAGATATGTAGAGACTGCTATATAGATGCTGTGAAAACAGGAGATGGAATGTGCCCGGGATGCAAAGAGCCATATAAGAACACTGAACTTGATGAAGTTGCTGTGGATAATGGAAGGCCACTTCCACTTCCACTTCCTCCACCAAACGGGGTGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAGTCAGCACTGATGAGAAGCCAGACTGGAGATTTTGATCACAATCGGTGGCTTTTTGAAACAAAGGGTACCTATGGCTATGGCAATGCCATATGGCCAAAGGAAGGGAACTTTGGAAATGGAAAAGAGGGTGATGTTGTTGAGCCAAGTGAGTTGATGAACAGACCTTGGAGGCCACTCACACGGAAACTAAAGATACCTGCTGCTGTTCTCAGCCCATATCGTCTTATCATTTGCATTCGTATGGTTGTCCTGGTACTCTTCTTGGCATGGCGGGTGAAGCACAAAAATGCTGATGCAATCTGGCTATGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCTTTTTCTTGGCTTTTGGATCAACTACCCAAGTTATGCCCAGTAAATCGTTCCACAGATCTCAATGTTCTGAAGGAAAAATTTGAAACACCAAGTCCTAACAATCCTACTGGAAAGTCTGATCTACCAGCCATAGATGTCTTTGTCTCTACTGCTGATCCTGAGAAAGAACCTCCTCTTGTCACTGCAAACACTATCTTGTCTATCTTGGCTGCAGATTACCCAGTTGAGAAACTTTCTTGCTATGTCTCTGATGATGGAGGTGCACTTCTAACATTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCCAATGTATGGGTTCCATTCTGCAGAAAACATGCTATAGAGCCTAGGAACCCTGAATCATATTTCAACTTAAAGAGAGATCCCTACAAAAACAAAGTGAAGCCAGATTTTGTCAAGGACCGTAGAAGGGTGAAGCGTGAGTATGATGAGTTCAAGGTTAGGATCAATGGTCTACCTGACTCTATCCGTCGCCGATCCGATGCCTTTCACGCTAGAGAGGAAATCAAGGCCATGAAACTTGAGAGACAAAATAGAGAAGATGAACCTGTAGAACCTGTAAAGATTTCAAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGGACTTGGTTGAATCCTTCATCTGAGCATTCTAAAGGTGACCACGCTGGTCTAATTCAGATGATGTTGAAACCTCCCAGTGATGAACCTCTTATTGGAAATGCTGATGATACAAAGCTCATTGACCTGACTGATGTCGATATCCGTCTTCCACTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAGAAAGCCGGGGCCATGAATGCCTTGGTTAGAGCCTCAGCCATCATGTCCAATGGCCCTTTTATACTAAATCTTGATTGTGATCACTACATCTACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGTGGTGGTGACCGCATTTGCTATGTCCAGTTCCCTCAGAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCTAATCATAACACAGTCTTCTTTGATGTAAACATGAGAGCCCTTGATGGACTTCAAGGGCCAGTGTATGTAGGAACTGGTTGTCTTTTCAGAAGGGTTGCTCTTTATGGTTTTGATCCTCCACGCTCTAAAGAACACCACTCAGGTTGTTGCTTTGGTAGTGGCAAGAAGAGTGCTAATACTAACTTCTCTGAAGAGAACCGGGCACTAAGGATGAGTGACTCTGATGAAGAAGAAATGAACCTATCAATGTTCCCTAAAAAATTTGGAAACTCAACTTTCCTCATAGACTCGATCCCTGTGGCAGAGTTCCAAGGCAGGCCTCTTGCTGATCACCCTGCAGTGAAAAATGGACGCCCTCCCGGGGCTCTCACGATACAGCGCGAGCTTCTTGATGCATCAACTGTGGCTGAGGCCATCAGTGTGATCTCCTGTTGGTACGAAGACAAGACTGAGTGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTCACTGGCTATAGGATGCACAATAGAGGATGGAAATCAGTGTACTGTGTTACAAAGCGTGATGCATTTCGTGGAACTGCTCCCATCAATCTCACTGATCGGCTTCATCAAGTCCTTAGATGGGCTACTGGCTCAGTTGAAATATTTTTTTCAAGAAACAATGCATTTCTAGCTAGCCCAAGAATGAAATTTCTTCAGAGAATTGCATATCTTAATGTTGGAATTTATCCATTCACTTCCATATTCCTTATTGTCTACTGCTTCCTTCCAGCACTTTCCCTCTTCTCTGGCCAATTCATTGTCCAAACTCTCAATGTTACTTTTCTTGCTTATCTCTTGACCATCACTGTTACCTTGTGCATGCTTGCTGTGCTTGAGATCAAGTGGTCTGGCATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCCCACTTAGCTGCTGTGCTTCAGGGTTTGCTCAAAGTCATTGCAGGCATTGAAATCTCCTTCACATTGACATCAAAATCTGTTGGAGATGATGTGGATGATGAGTTTGCTGATCTCTATATTGTCAAGTGGACATCACTTATGATACCACCAATCACAATTATGATGGTTAACTTAATAGCAATAGCAGTTGGTGTTAGCAGGACCATATATAGTGTCATACCACAGTGGAGTCGTTTAATAGGTGGTGTTTTTTTCAGTTTTTGGGTATTGACACATCTCTACCCTTTTGCAAAGGGTTTAATGGGAAGAAGAGGGAGAACACCTACCATTGTTTTTGTATGGTCAGGCCTCATAGCAATCACAATATCACTCCTTTGGGTGGCTATCAATCCCCCTGCTGGTACCAACCAAATTGGTGGTTCATTTCAGTTCCCATGA 3426 0.4381 MTSKPFKPSRLSQSASSDAPEGQKPPLPPTVTFGRRTSSGRYISYSRDDLDSELGSNDFMNYTVHLPPTPDNQPMDPSISQKVEEQYVSSSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAIPGCDCKVMSDERGVDILPCECDFKICRDCYIDAVKTGDGMCPGCKEPYKNTELDEVAVDNGRPLPLPLPPPNGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGNFGNGKEGDVVEPSELMNRPWRPLTRKLKIPAAVLSPYRLIICIRMVVLVLFLAWRVKHKNADAIWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPSPNNPTGKSDLPAIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHAIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKLERQNREDEPVEPVKISKATWMADGTHWPGTWLNPSSEHSKGDHAGLIQMMLKPPSDEPLIGNADDTKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHSGCCFGSGKKSANTNFSEENRALRMSDSDEEEMNLSMFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIQRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLTITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSVGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLIGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0537 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 191 IPR013083 -
Apr5g0537 1141 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 34 1139 - -
Apr5g0537 1141 SUPERFAMILY RING/U-box 116 181 - -
Apr5g0537 1141 MobiDBLite consensus disorder prediction 1 20 - -
Apr5g0537 1141 Pfam Cellulose synthase 375 1132 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr5g0537 1141 SUPERFAMILY Nucleotide-diphospho-sugar transferases 390 935 IPR029044 -
Apr5g0537 1141 MobiDBLite consensus disorder prediction 1 38 - -
Apr5g0537 1141 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 578 716 IPR029044 -
Apr5g0537 1141 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Apr5g0537 1141 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 34 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0537 Apr-Chr5 7314772 7318783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0537 6 1141 Glycosyltransferase AT3G03050 84.192 0.0 2013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0537 K20924 - gmx:100792604 2189.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0537 5 7314772 7318783 Apr7g0455 7 10873474 10879079 ECH
Apr5g0537 5 7314772 7318783 Apr5g0537 5 7314772 7318783 ECH