Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0244 ATGAGGATGAGTATGCTATTAGACATTAACATTGTTGTTGTGGCAACCTTTGTCATGATCATGATGATGGTGCCCAAATACGTGAGTGCCCAAAATATAGGTGACATAGTTACACAAGATTTCTTCAATGGCATAATTAATCAGGCTGATGCAAGTTGTGCAGGGAAGAACTTCTACACACGAGATGCTTTTCTCAATGCTCACAATTCCTACAATCAATTTGGTAGTCTTGATAATGCCGATAGCTCAAAGCGTGAAGTTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGCTATATAGAAGAGATTGATGGTGCATCAAAGGACTATTGTGATGAATCCAACACTCAATACCCGTGTGCACCTAACAAAGGGTACTTTGGGCGTGGACCAATCCAACTATCATGGAATTTCAACTATGGACCAGCTGGCCAAGACAACAATTTTGATGGGTTGAATGCTCCAGAGACAGTGGCTAATGATGCTACTGTGTCCTTCAAGACAGCATTGTGGTACTGGATGAAAAATGTGCGCCCTGTCGTTAACCAAGGCTTTGGTGCAACCATTAGAGCTATCAATGGCGCACTTGAATGTGATGGTAAAAACCCTGGCACAGTTGAAACTCGAGTTAACTACTACAAAGAATATTGCGAAAAACTAGGCGTTTCTCCTGGTGACAATCTTACTTTCTTATATTATCATATCACTTTTGTTTTCAGAGAGGAGATGGTGAGGATGGGGAACAAGTTACAGAACATTGTTCTCACACTAGTGATGAGTGGCTTTGTCTTGATGATGATGGTGAGAGCTCAAAACTGTGGGTGTGAGGCAGAGTTATGTTGTAGCCAATACGGGTATTGTGGGAATGGTGATGACTACTGTGGTAGAGGATGCCAAGAAGGTCCTTGTTTTGGCACTGCAACACCCAACGATGTTTCTGTCTCTGACATTGTCACATTTGATTTCTTCAATGCTATAATTGATCAAGCTGATCCCAGTTGTCCAGGGAAGTATTTCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCTATGACCAGTTTGGTAGGATTGGTTCTGTAGATGACTCTAAGCGTGAAATTGCAGCTGCTTTTGCTCATTTCACCCATGAAACTGGACATTTTTGCTATATAGAAGAGAATGACGGTCCATCAAAGGATTACTGTGATGAAAGCAACACCCAGTATCCGTGTGCTCCTAACAAAGGCTACTATGGGAGAGGACCCATCCAACTATCGTGGAACTTCAATTATGGACCAGCTGGGGAGAGCAACGGTTTTGATGGGTTGAACGCTCCAGAGACAGTGGCCAATGACCCTGTTGTGTCTTTCAAGACAGCATTATGGTATTGGACACAAAATGTGAGCCCTATCGTTAACCAAGGCTTTGGTGCAACCATCAGAGTCATCAATGGCCAACTTGAATGTGATGGTGCCAACCCTGAAACTGTTCTGGCTCGCGTCAATTACTATTCCCAATATTGTTCACAACTCGGTGTTGATCCTGGTGATAACCTCTATTGCTAA 1560 0.4288 MRMSMLLDINIVVVATFVMIMMMVPKYVSAQNIGDIVTQDFFNGIINQADASCAGKNFYTRDAFLNAHNSYNQFGSLDNADSSKREVAAAFAHFTHETGHFCYIEEIDGASKDYCDESNTQYPCAPNKGYFGRGPIQLSWNFNYGPAGQDNNFDGLNAPETVANDATVSFKTALWYWMKNVRPVVNQGFGATIRAINGALECDGKNPGTVETRVNYYKEYCEKLGVSPGDNLTFLYYHITFVFREEMVRMGNKLQNIVLTLVMSGFVLMMMVRAQNCGCEAELCCSQYGYCGNGDDYCGRGCQEGPCFGTATPNDVSVSDIVTFDFFNAIIDQADPSCPGKYFYSRDAFLNALNSYDQFGRIGSVDDSKREIAAAFAHFTHETGHFCYIEENDGPSKDYCDESNTQYPCAPNKGYYGRGPIQLSWNFNYGPAGESNGFDGLNAPETVANDPVVSFKTALWYWTQNVSPIVNQGFGATIRVINGQLECDGANPETVLARVNYYSQYCSQLGVDPGDNLYC* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0244 519 ProSitePatterns Chitinases family 19 signature 1. 53 75 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 ProSitePatterns Chitinases family 19 signature 1. 338 360 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 PANTHER ENDOCHITINASE EP3-LIKE 29 233 - -
Apr5g0244 519 PANTHER ENDOCHITINASE EP3-LIKE 250 519 - -
Apr5g0244 519 SMART ChitinBD_3 276 307 IPR001002 GO:0008061
Apr5g0244 519 Pfam Chitin recognition protein 275 307 IPR001002 GO:0008061
Apr5g0244 519 CDD chitinase_GH19 322 519 - -
Apr5g0244 519 Gene3D - 308 519 - -
Apr5g0244 519 Gene3D Endochitinase, domain 2 105 162 - -
Apr5g0244 519 Gene3D Endochitinase, domain 2 392 445 - -
Apr5g0244 519 SUPERFAMILY Plant lectins/antimicrobial peptides 274 310 IPR036861 GO:0008061
Apr5g0244 519 CDD chitinase_GH19 37 233 - -
Apr5g0244 519 ProSitePatterns Chitinases family 19 signature 2. 168 178 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 Gene3D - 272 307 IPR036861 GO:0008061
Apr5g0244 519 PANTHER CHITINASE-RELATED 29 233 - -
Apr5g0244 519 PANTHER CHITINASE-RELATED 250 519 - -
Apr5g0244 519 SUPERFAMILY Lysozyme-like 33 234 IPR023346 -
Apr5g0244 519 Gene3D - 32 233 - -
Apr5g0244 519 ProSitePatterns Chitin recognition or binding domain signature. 279 298 IPR018371 GO:0008061
Apr5g0244 519 Pfam Chitinase class I 472 519 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 Pfam Chitinase class I 187 232 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 Pfam Chitinase class I 36 181 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 Pfam Chitinase class I 321 467 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g0244 519 ProSiteProfiles Chitin-binding type-1 domain profile. 274 309 IPR001002 GO:0008061
Apr5g0244 519 SUPERFAMILY Lysozyme-like 317 519 IPR023346 -
Apr5g0244 519 CDD ChtBD1 279 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0244 Apr-Chr5 2188744 2193457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0244 250 519 Glycoside Hydrolase AT3G54420 69.259 1.59e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0244 K01183 - atr:18448760 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2403 2 28671590 28672846 Apr5g0244 5 2188744 2193457 PCT