Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2403 ATGGGAAACAAATTGCTAAGCATTTTTCTAGCGGTGGCCTTTGTTATGATAGCAAAGGTGCCCAAAAACGTGAGTGCTCAAAATTGTGGGTGTGAGGCAGGGTTATGTTGCAGCCAATATGGGTATTGTGGTAGCGGTGATGACTACTGTGGCACAGGGTGCCAACAGGGTCCTTGTTATGGGAGCCAAAACCCACCAAGTTCCCCTAGCAACGATGTTAATGTTGCTGACATTGTCACACCAACATTCTTCAATGGCATAATTGATCAGGCTGACTCAGGTTGTGCAGGGAAGAACTTCTACTCAAGAGATGCTTTCCTCAACGCTCTCAATTCTTACAATCAGTTTGGGAGGATTGGTTCTGTCGATGACTCCAAACGCGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGTTACATTGAAGAGATAGATGGAGCATCGAAGGACTATTGCGAAGAAAAGAATACACAGTATCCTTGTGCTCCTAACAAAGGCTACTATGGGCGGGGTCCGATCCAATTATCTTGGAACTTCAACTATGGACCTGCAGGACAGAGCAACGATTTCGATGGATTGAATTCTCCTGAAACAGTGGCCAATGATCCTGTGGTCTCCTTCAAGACAGCATTATGGTATTGGATGCAACACGTGCGCCCTGTCATCAACCAAGGCTTTGGCGCAACCATTAGAGCGATCAATGGTCAACTCGAATGTGATGGTGCCAATCCCACCACAGTTCAGGCTCGAGTTAATTATTACACTGATTACTGTAGACAATTGGGTGTTGCTACTGGTGACAATCTTACTTGCTAA 831 0.4537 MGNKLLSIFLAVAFVMIAKVPKNVSAQNCGCEAGLCCSQYGYCGSGDDYCGTGCQQGPCYGSQNPPSSPSNDVNVADIVTPTFFNGIIDQADSGCAGKNFYSRDAFLNALNSYNQFGRIGSVDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCEEKNTQYPCAPNKGYYGRGPIQLSWNFNYGPAGQSNDFDGLNSPETVANDPVVSFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPTTVQARVNYYTDYCRQLGVATGDNLTC* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2403 276 PANTHER CHITINASE-RELATED 8 276 - -
Apr2g2403 276 Gene3D - 23 61 IPR036861 GO:0008061
Apr2g2403 276 ProSitePatterns Chitinases family 19 signature 2. 210 220 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr2g2403 276 ProSiteProfiles Chitin-binding type-1 domain profile. 26 61 IPR001002 GO:0008061
Apr2g2403 276 ProSitePatterns Chitinases family 19 signature 1. 95 117 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr2g2403 276 ProSitePatterns Chitin recognition or binding domain signature. 31 50 IPR018371 GO:0008061
Apr2g2403 276 PANTHER ENDOCHITINASE EP3-LIKE 8 276 - -
Apr2g2403 276 PIRSF Endochitinase 1 276 IPR016283 GO:0004568|GO:0005975
Apr2g2403 276 PRINTS Chitin-binding domain signature 29 37 IPR001002 GO:0008061
Apr2g2403 276 PRINTS Chitin-binding domain signature 37 44 IPR001002 GO:0008061
Apr2g2403 276 PRINTS Chitin-binding domain signature 44 51 IPR001002 GO:0008061
Apr2g2403 276 CDD ChtBD1 31 55 - -
Apr2g2403 276 SMART ChitinBD_3 28 59 IPR001002 GO:0008061
Apr2g2403 276 SUPERFAMILY Lysozyme-like 74 276 IPR023346 -
Apr2g2403 276 Pfam Chitinase class I 79 222 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr2g2403 276 Pfam Chitinase class I 229 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr2g2403 276 CDD chitinase_GH19 79 276 - -
Apr2g2403 276 Gene3D Endochitinase, domain 2 147 204 - -
Apr2g2403 276 SUPERFAMILY Plant lectins/antimicrobial peptides 24 64 IPR036861 GO:0008061
Apr2g2403 276 Gene3D - 73 276 - -
Apr2g2403 276 Pfam Chitin recognition protein 26 59 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2403 Apr-Chr2 28671590 28672846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2403 7 276 Glycoside Hydrolase AT3G54420 71.852 2.68e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2403 K01183 - gmx:100776582 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2403 2 28671590 28672846 Apr2g2403 2 28671590 28672846 ECH
Apr2g2403 2 28671590 28672846 Apr5g0244 5 2188744 2193457 PCT