Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0241 ATGAGCAAGCGACAAGAAGATGAGCGTAACATAGCTGCTCTCGACTCCAGATTCAGCCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGTAGCATGCCTGGTAAAATATTATTGAGTCGTTGGTCTGACTCACCGGACAACTCAAATTACAAGAGGAGTTTTTCTCACAATGATGCTGGCACAAGTGATCATGCATCTGGGACAATAGAGGAGGAATTGCATAGTACAAGCAAACCAATTAGTGTTGCTAATGTTACTAAGCTACAGATCTCAACATCCTTTGGAGACAGCCCACCTGAAGAAATCCGCAAGTCTACCATGGGTGCTAGAGCTACAGATTCTACAAGAGTTATGAAGTTCACTAAGGTGCTTTCCGGGACAGTGGTTATATTAGATAAGTTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACGATATGCGTCCTAAGGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGCGAGGGAGTTCTAAGAAGGAAGCGCCTTGAATATCTCGACTGTATTTCACAGTATTACGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTCGCCAGATTGGTGTTGATTGTCCAAGAACTGTTCCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTCGTTACACCATTTCTGGTTGTTTTCTTGTCAGAATATTTAGAAGGGGGTATAGATAATTGGTCAATGTCTGATTTATCTTCAGATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCCTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTCGTTTTTAAGTTGAAAGAATTGGTCAGGAGGATTGATGAGCCTGTTTCGCGACATATGGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGTGAGATACCATTCCATCTCATCAGCCGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCGGACAAACTCCAGAAACTGGATTTCCAAGAATTGGTGATGTTCCTTCAACACCTTCCAACACAAAACTGGACACACCAAGAGCTGGAGATGGTGCTTTCCCGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCAAACCATTTAGCTAGCTGA 1323 0.4339 MSKRQEDERNIAALDSRFSQTLRNVQGLLKGRSMPGKILLSRWSDSPDNSNYKRSFSHNDAGTSDHASGTIEEELHSTSKPISVANVTKLQISTSFGDSPPEEIRKSTMGARATDSTRVMKFTKVLSGTVVILDKLRELAWSGVPDDMRPKVWRLLLGYAPPNSDRSEGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEDQGLEFLQFAFRWFNCLLIREIPFHLISRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPNHLAS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0241 440 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 180 304 - -
Apr5g0241 440 ProSiteProfiles TBC/rab GAP domain profile. 143 370 IPR000195 -
Apr5g0241 440 Gene3D - 305 440 - -
Apr5g0241 440 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 306 428 IPR035969 -
Apr5g0241 440 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 120 330 IPR035969 -
Apr5g0241 440 MobiDBLite consensus disorder prediction 54 77 - -
Apr5g0241 440 SMART tbc_4 140 396 IPR000195 -
Apr5g0241 440 Gene3D - 118 169 - -
Apr5g0241 440 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 437 - -
Apr5g0241 440 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 9 437 - -
Apr5g0241 440 Pfam Rab-GTPase-TBC domain 146 391 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0241 Apr-Chr5 2167789 2173235 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0241 K20360 - gmx:100819281 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2400 2 28662559 28668338 Apr5g0241 5 2167789 2173235 PCT