Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2400 ATGAAGAACGACCCCAACAACAACAACAAAGACACTGCCGTAGGAATCCTAGATTCACGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAAATATTATTGAGTCAAAGAGTTGACCTACCAGATAGCTCAAACTTGTCATCGCCAACTTACAAAAGGAGCTCCTCATACAGTGAGACTGGCACAAGTGATCCCACATCTGAGAGAGTTGAGGAGGAAGTTCACAGTACAAGCAAACCATTTGGTACTCCCAGTGAGAATAAGTTAAAGATATCAACCTCCCATGTGGAGAACCCATCTGAAGAAGTTCGGAAATCTTCCATGAGCGCTAGAGCTACAGATTCTGCTAGAGTTATAAAGTTCACTAAGGTGCTTTCAGGGACAATGGTTATATTAGAGAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGCCTTGAGTATCTTGACTATATTTCACAGTATTATGATATTCCTGATACACAACGCTCAGATGATGAGATAAACATGCTACGCCAGATTGGTGTTGATTGTCCAAGAACTGTGCCTGATGTTTCTTTCTTCCAGCAAGAGCAAGTTCAGAAATCACTGGAGCGTATTCTGTACACATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAAGGAATAAATGATCTTGTTACACCATTTTTAGTTGTTTTTCTATCAGAATACTTGGAAGGGAGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAGGCTGATTGCTATTGGTGCTTGTCAAAGTTGCTTGATGGAATGCAAGACCATTACACATTTGCTCAACCGGGAATTCAAAGGCTGGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAACCATATGGAGCAGCAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGTGAGATACCCTTCAACCTCGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGACAAACTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTCCAACACCTTCCAACTCAGAACTGGACTCACCAGGAGCTTGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGCCATTTAGCTACCTGA 1347 0.4232 MKNDPNNNNKDTAVGILDSRFNQTLRNVQGLLKGRSIPGKILLSQRVDLPDSSNLSSPTYKRSSSYSETGTSDPTSERVEEEVHSTSKPFGTPSENKLKISTSHVENPSEEVRKSSMSARATDSARVIKFTKVLSGTMVILEKLRELAWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDYISQYYDIPDTQRSDDEINMLRQIGVDCPRTVPDVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSDLSSDEISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSNHMEQQGLEFLQFAFRWFNCLLIREIPFNLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPSHLAT* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2400 448 MobiDBLite consensus disorder prediction 49 73 - -
Apr2g2400 448 MobiDBLite consensus disorder prediction 49 118 - -
Apr2g2400 448 MobiDBLite consensus disorder prediction 87 103 - -
Apr2g2400 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Apr2g2400 448 SMART tbc_4 148 404 IPR000195 -
Apr2g2400 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
Apr2g2400 448 Gene3D - 129 179 - -
Apr2g2400 448 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 2 445 - -
Apr2g2400 448 Gene3D - 313 448 - -
Apr2g2400 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 130 338 IPR035969 -
Apr2g2400 448 Pfam Rab-GTPase-TBC domain 155 399 IPR000195 -
Apr2g2400 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 188 312 - -
Apr2g2400 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2400 Apr-Chr2 28662559 28668338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2400 K20360 - gmx:100785695 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2400 2 28662559 28668338 Apr2g2400 2 28662559 28668338 ECH
Apr2g2400 2 28662559 28668338 Apr5g0241 5 2167789 2173235 PCT