Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0219 ATGGACCCCACCGAGTTGAAGCGTGTTTTCCAAATGTTTGATCGCAATGGTGATGGACGAATCACGAAGAAAGAGCTAAGCGACTCGTTGGAGAATTTAGGTATCTTCATTCCCGACAAGGAGTTGACACAAATGATCGAAAAAATTGACGTAAATGGAGATGGGTGCGTGGACATGGACGAGTTTGGAGAACTGTACCAATCCATCATGGATGAACGTGACGAAGAAGAGGACATGAGGGAAGCGTTCAACGTCTTCGATCAAAACCGTGATGGCTTCATCACCGTTGATGAACTAAAAACTGTTTTGGCCTCTCTTGGCCTAAAACAAGGGAGAACCGTGGAAGAATGCAAGAAGATGATCATGAAGGTGGATGTTGATGGTGATGGTATGGTTAATTACAAGGAGTTTAAACAAATGATGAAGGGGGGAGGATTTAGTGCTCTTGGTTAG 453 0.4415 MDPTELKRVFQMFDRNGDGRITKKELSDSLENLGIFIPDKELTQMIEKIDVNGDGCVDMDEFGELYQSIMDERDEEEDMREAFNVFDQNRDGFITVDELKTVLASLGLKQGRTVEECKKMIMKVDVDGDGMVNYKEFKQMMKGGGFSALG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0219 150 Gene3D - 69 144 - -
Apr5g0219 150 PRINTS Parvalbumin signature 65 83 - -
Apr5g0219 150 PRINTS Parvalbumin signature 87 103 - -
Apr5g0219 150 PRINTS Parvalbumin signature 124 137 - -
Apr5g0219 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 149 - -
Apr5g0219 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Apr5g0219 150 SMART efh_1 116 144 IPR002048 GO:0005509
Apr5g0219 150 SMART efh_1 5 33 IPR002048 GO:0005509
Apr5g0219 150 SMART efh_1 41 69 IPR002048 GO:0005509
Apr5g0219 150 SMART efh_1 78 106 IPR002048 GO:0005509
Apr5g0219 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Apr5g0219 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Apr5g0219 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Apr5g0219 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Apr5g0219 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Apr5g0219 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Apr5g0219 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Apr5g0219 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Apr5g0219 150 CDD EFh 82 142 IPR002048 GO:0005509
Apr5g0219 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Apr5g0219 150 CDD EFh 5 62 IPR002048 GO:0005509
Apr5g0219 150 SUPERFAMILY EF-hand 5 144 IPR011992 -
Apr5g0219 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Apr5g0219 150 Gene3D - 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0219 Apr-Chr5 2012757 2013435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0219 1 149 EF-hand Containing Proteins AT1G05990 81.333 2.75e-81 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0219 K13448 - csv:101210877 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2377 2 28508228 28509041 Apr5g0219 5 2012757 2013435 PCT