Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2377 ATGCCAACTATTTTGCTTAGAATTTTCCTTCTTTACAATCTCCTCCGTTCGTTTCTCCCCCCTTCTTCACTTTCTTCTTCTTCATCATCGAGGGCTCTCAAGAGAATTATAATGGAAACCAATGAGCTGAAACGTGTTTTTCAAATGTTCGATCACAATGGGGATGGGCGAATAACGAAGAAGGAGCTGAACGAATCGTTGGAAAAGTTGGGAATTTTTATCCCAAACAAGGAGCTGACACAGATGATTGAGAAGATCGATGTGAATGGAGATGGGTGTGTGGACATTGATGAGTTTGGAGAATTGTACGGGTCCATAATGGAGGAGCGTGATGAAGAGGAGGACATGAGAGAAGCGTTCAACGTTTTCGACCAAAACGGTGATGGGTTCATAACGGTTGAAGAGTTGAGGACAATTTTGTCGTCTTTGGGGTTAAAACAAGGAAGAATGGTGGAAGATTGCAAGAAGATGATAACGAAGGTTGATGTAGATGGAGATGGAATGGTGGATTTCAAGGAGTTTAAGCAAATGATGAAAAGGGGTGGCTTTGCTGCTCTCACTCTCTCTAATTAA 573 0.4206 MPTILLRIFLLYNLLRSFLPPSSLSSSSSSRALKRIIMETNELKRVFQMFDHNGDGRITKKELNESLEKLGIFIPNKELTQMIEKIDVNGDGCVDIDEFGELYGSIMEERDEEEDMREAFNVFDQNGDGFITVEELRTILSSLGLKQGRMVEDCKKMITKVDVDGDGMVDFKEFKQMMKRGGFAALTLSN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2377 190 Pfam EF-hand domain pair 41 103 IPR002048 GO:0005509
Apr2g2377 190 Pfam EF-hand domain pair 113 179 IPR002048 GO:0005509
Apr2g2377 190 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Apr2g2377 190 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Apr2g2377 190 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Apr2g2377 190 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Apr2g2377 190 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Apr2g2377 190 PANTHER CALMODULIN-LIKE PROTEIN 3 38 186 - -
Apr2g2377 190 Gene3D - 13 103 - -
Apr2g2377 190 CDD EFh 119 179 IPR002048 GO:0005509
Apr2g2377 190 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Apr2g2377 190 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Apr2g2377 190 Gene3D - 104 183 - -
Apr2g2377 190 SUPERFAMILY EF-hand 40 180 IPR011992 -
Apr2g2377 190 CDD EFh 42 99 IPR002048 GO:0005509
Apr2g2377 190 SMART efh_1 153 181 IPR002048 GO:0005509
Apr2g2377 190 SMART efh_1 42 70 IPR002048 GO:0005509
Apr2g2377 190 SMART efh_1 78 106 IPR002048 GO:0005509
Apr2g2377 190 SMART efh_1 115 143 IPR002048 GO:0005509
Apr2g2377 190 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Apr2g2377 190 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 38 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2377 Apr-Chr2 28508228 28509041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2377 5 185 EF-hand Containing Proteins AT2G43290 57.209 3.94e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2377 K13448 - gmx:100527487 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2377 2 28508228 28509041 Apr2g2377 2 28508228 28509041 ECH
Apr2g2377 2 28508228 28509041 Apr5g0219 5 2012757 2013435 PCT