Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0210 ATGTCTGAGACAAATGCTTCATTTGTTGAAGGTTCCCACTCTCAAGTTCGTGTCTTTGTGAGGAGAAATAAGAGAAGCAGAATAATTCAACAAAAGGAGCATCTACCTTCAAATACCCACAACGACAAGAAGCTTGTCCTACCCGAGATTGAAGATTTTGCATACAGTGGAGCAAAAGAATTGGATCACTGTAGGAAATCAGAAATGGACTCAGATGTGACTCCAGTGAAAAGTGAAGTTGCTTCTGCTAGACTCAGCGGTGAATCACCTGCTCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTGGACACTATGGGATGTGAGAAGGCTGGCAATACACTACCTCCTAAGGTTGGGTTTTATACACGAAAAGCCACTAACTTGAAAAAAATTGCTAATATTTGTCTCATGAAGTATGAGGGAGACATACCTAGCTCAATTGAACAACTACTCTTACTTCCAGGCATTGGTCCTAAGATGGCTCATCTGGTTATGAATGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCATCGCATTTGCAACCGGCTTGGGTGGGTGTCAAGATTGGGCACAAAACAGAAAACTTTGACTCCTGAAGAGACAAGAGGGGCACTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTATTGGTAGGATTTGGACAGACAATTTGTACACCTCTGAGACCTCGTTGTGGAGAATGCCGTATAAGTGAGTTATGCCCATCAGCCTTCAAGGAAGCCTCAAACTCAAGCCCATCTTCCAAGCCCAAAAAGTCTGGACTCAACAAAAAGCTTTAA 855 0.4374 MSETNASFVEGSHSQVRVFVRRNKRSRIIQQKEHLPSNTHNDKKLVLPEIEDFAYSGAKELDHCRKSEMDSDVTPVKSEVASARLSGESPAHWEKVLEGIRKMRCSADAPVDTMGCEKAGNTLPPKVGFYTRKATNLKKIANICLMKYEGDIPSSIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEETRGALQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECRISELCPSAFKEASNSSPSSKPKKSGLNKKL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0210 284 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 46 126 - -
Apr5g0210 284 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 127 284 - -
Apr5g0210 284 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 243 259 IPR004035 -
Apr5g0210 284 SUPERFAMILY DNA-glycosylase 126 274 IPR011257 GO:0003824|GO:0006281
Apr5g0210 284 Pfam Helix-hairpin-helix motif 147 175 IPR000445 GO:0003677
Apr5g0210 284 CDD ENDO3c 78 239 IPR003265 GO:0006284
Apr5g0210 284 MobiDBLite consensus disorder prediction 263 277 - -
Apr5g0210 284 Gene3D Hypothetical protein; domain 2 88 174 - -
Apr5g0210 284 Gene3D - 175 265 IPR023170 -
Apr5g0210 284 MobiDBLite consensus disorder prediction 263 284 - -
Apr5g0210 284 ProSitePatterns Endonuclease III family signature. 150 179 IPR004036 -
Apr5g0210 284 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 46 126 - -
Apr5g0210 284 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 127 284 - -
Apr5g0210 284 SMART endo3end 81 241 IPR003265 GO:0006284
Apr5g0210 284 Pfam HhH-GPD superfamily base excision DNA repair protein 126 209 IPR003265 GO:0006284
Apr5g0210 284 SMART ccc3 242 262 IPR003651 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0210 Apr-Chr5 1902631 1908444 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0210 K10773 - gmx:100818398 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2372 2 28477382 28479958 Apr5g0210 5 1902631 1908444 PCT