Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2372 ATGGAATTCAACGATCAGAAGATAGAAACTATGGAGTACGGACCCACCAATCATTGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACTCCAAAACATCAAAACAAAAATTTACTATGATGTTTGGTTTAGGGCGAATCCAAGTGTCGATGTTTGCCACAACAGCAAGAACTCATTCACCTCACTCCACTCTATCACTCACAAATGAATTGGCTCAAAGTAGTGACTCCCCTGCACATTGGAAAGAGGTTCTTAAAGGAATTCGTGAAATGAGGTGTTCTACAGATGAACAAGTAGATACTATTGATGCACTACCACCTAAGGAAAGAAGATTTGCTGTGCTGGCATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCGTGGAGCAACTCAACGACTTCATGAAAATAGTCTTCTTACTGCTGATGCAATCAACAAAGCTGATGAAGAAACCATCAAGAAGTTGATTTACCCTGTTGGATTTTACACAAGAAAAGCCAGTAACCTAAAGAAAATTGCAAATATTTGTCTCATTAAGTATGATGGAGACATACCTGACTCAGTTGAGGAACTACTCTTACTTCCAGGCGTAGGTCCTAAGATTGCGCATCTGGTTATGATTGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTTCACCGCATTTGCAATCGGCTTGGATGGGTTTCGAGATCAGGCACAAAACAGAAAACTTTGACACCTGAAGAAACAAGAAAAGCGTTACAACGGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATCCACTTTTGGTAGGATTTGGACGGAAAATTTGTACTCCTCTACGGCCTCACTGTGGAGAATGTAGTGTAAGTAGGTTCTGTCCATCTGCGTACAAGGAAACTTCAAGCCCATCGTCCAAGTCCAATAAGTTTACACCAAACAAGAAGCCTTAA 954 0.414 MEFNDQKIETMEYGPTNHCTLSLSLSLSLHSKTSKQKFTMMFGLGRIQVSMFATTARTHSPHSTLSLTNELAQSSDSPAHWKEVLKGIREMRCSTDEQVDTIDALPPKERRFAVLASSLLSSQTKEHVTRGATQRLHENSLLTADAINKADEETIKKLIYPVGFYTRKASNLKKIANICLIKYDGDIPDSVEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRSGTKQKTLTPEETRKALQRWLPREEWVPINPLLVGFGRKICTPLRPHCGECSVSRFCPSAYKETSSPSSKSNKFTPNKKP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2372 317 Pfam HhH-GPD superfamily base excision DNA repair protein 117 255 IPR003265 GO:0006284
Apr2g2372 317 SUPERFAMILY DNA-glycosylase 106 301 IPR011257 GO:0003824|GO:0006281
Apr2g2372 317 SMART endo3end 120 276 IPR003265 GO:0006284
Apr2g2372 317 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 75 310 - -
Apr2g2372 317 CDD ENDO3c 112 274 IPR003265 GO:0006284
Apr2g2372 317 SMART ccc3 277 297 IPR003651 GO:0051539
Apr2g2372 317 MobiDBLite consensus disorder prediction 297 317 - -
Apr2g2372 317 Pfam Helix-hairpin-helix motif 182 209 IPR000445 GO:0003677
Apr2g2372 317 Gene3D - 212 300 IPR023170 -
Apr2g2372 317 ProSitePatterns Endonuclease III family signature. 185 214 IPR004036 -
Apr2g2372 317 Gene3D Hypothetical protein; domain 2 92 211 - -
Apr2g2372 317 MobiDBLite consensus disorder prediction 297 311 - -
Apr2g2372 317 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 75 310 - -
Apr2g2372 317 Hamap Endonuclease III-like protein 1 [NTHL1]. 77 300 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2372 Apr-Chr2 28477382 28479958 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2372 K10773 - gmx:100805799 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2372 2 28477382 28479958 Apr2g2372 2 28477382 28479958 ECH
Apr2g2372 2 28477382 28479958 Apr5g0210 5 1902631 1908444 PCT