Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0187 ATGGATATTCACATGAAGATGGAGGCTCTAGTGTCTTTGTTCGTGGCCCTTATGTTGTGCGGTTGTACTGCTCTCAAGGAGTGCACAAACATTCCTACACAATCACACACGTTCAGATTTGAGCTATTGACGTCCAAGAATGAAACGTGGAAGGCAGAGGTGATGTCTCACTACCATTTGACACCAACGGATGATTCCGCTTGGGCTGACTTGCTGCCAAGGAAACTCTTGACAGAACAAAACCAATATGACTGGGCAGTGATGTATAAGAAAATTAAGAACGTGGGTGTCTTCAACTCACCTGAAGGATTACTCAAAGAAGTGCCTCTTCAAGATGTGAGATTGAACGAGGATTCAATACATGCCCGGGCACAGCAGACAAATTTGGATTATCTATTGATGTTGGATGTGGACAGGTTGCTTTGGAGCTTCCGAAAGACAGCTGGTCTACCCACTCCTGGAACTCCTTATGGAGGGTGGGAAGGTCCAGAAGTTGAGCTCAGAGGTCATTTTGTTGGGCATTACTTAAGCGCATCCGCTCTAATGTGGGCAAGCACACAGAATGATATCCTGAGGCAGAGAATGTCAGCTGTTGTTACTGGTATGTCTGCTTGTCAAGAGAAAATTGGAAGTGGATATCTATCTGCATTTCCATCGGAGTTTTTTGATCGATTTGAAGCTATTCAACCTGTGTGGGCTCCTTATTACACCATTCACAAGATCTTGGCCGGCCTCTTGGATCAACATACGTTTGCGGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGATGAATGTCATAGCAAGGTTCACTATAAATAGACATTATGAATCACTGAATGAGGAAACTGGAGGAATGAATGATGTCCTCTACAAATTATACAGGATAACGGGAGATTCTAAGCATCTAGTGTTGGCTCACCTTTTTGACAAGCCATGCTTTCTAGGTTTGCTGGCAGTACAGGCTAACGATATAGCTGATCTTCACTCTAATACGCATATCCCGATTCTTGTTGGATCTCAAGAGCGTTATGAAATAATAGGCGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGCTCTTGTAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCTGTCCATGAATTCTGGAGAGATCCAAAGAGAATAGCAGACAACATACGAACAACAGAGACTGAGGAGTCATGCACAACTTATAATATGTTGAAGGTTTCACGCCACCTCTTTAGATGGACGAAAGAAATCTCTTATGCAGATTATTATGAGCGTGCCTTAACCAATGGTGTACTCAGCATTCAAAGAGGAACTGATCCTGGAGTGATGATTTATATGCTTCCACAAGGTGTTGGGTTTTCCAAGGCTAAAACTGGACATAGTTGGGGAACTCCGTTTGACTCTTTCTGGTGCTGTTATGGAACCGGAATTGAATCATTTTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGGGAAAAATCCTACTCTTTACATCATTCAGTACATATCAAGTTCATTTGATTGGAAATCTGGAAAAATTTTGATCAGTCAAACTGTTGTTCCAGCTGTGTCATGGGATCCTTATTTACGAGTCTCCTTTATTTTTTCTCCTGCTGAGAGTACTTCATCTACTTTAAACTTTCGAATACCGTCTTGGACTCATTTAGACGGTGCCAAAGCGGTATTAAATGCTGAAGTTTTATCTTTGCCGGCTCCAGGAAAGTTTTTGTCAATAACGCGACAATGGCTTGCCGGTGACAAGCTGACTCTTCAGTTTCCCATTACTCTCAGAACAGAGGCAATAAAAGATGATAGGCCTGACTATGTATCAGTTAAAGCAATTCTCTATGGTCCTTATCTTCTTGCGGGTCATACTAGCGGCGGTGATTGGGAACTTAAGGATGGGGGCAATTCAAACTGGATTACTCCAATTCCTGCCAGTTACAATAGTCAACTAATTTCTTGTGCACAGAACTTTGAAAAATCAACTTATGTCTTAGCAAACTCAAATCAAACCCTTGCGATGCAAATATTACCTCAACCTGGCACTGATTTGGCTCCTCGATCAACTTTTAGACTTGTGCCAAAGGAATCGAATGGTACATCAGTGATGTTGGAACCATTTGATCTCCCTGGAATGTACGTGACTGAACAAGGACCAGACAAATCTCTTAACATCGTAAATTTTTCACCTGGGACATCTTCTGCTTTTTCAGTAATACCGGGGTTGGATGGACGAAATGGAACTATATCTCTGGAATCCGAAAGCAACAAGGGTTGTTACGTGTATACTGGTCTGAATTCTGCTGCAGGAGTTAAGCTCAGTTGCATGTCTGCTTCTAACCCTTCTTTTAACCAAGCAACCAGTTTTGTCGCTTTGGATGGAATAAGCCAATACAATCCTGTTTCTTTCGTAGCTAAAGGAGCAAACAGGAATTTTCTTTTAGAGCCATTATTCAAATTTAGAGATGAACATTATACTGTTTATTTCAATATTCAAGATTGA 2541 0.4152 MDIHMKMEALVSLFVALMLCGCTALKECTNIPTQSHTFRFELLTSKNETWKAEVMSHYHLTPTDDSAWADLLPRKLLTEQNQYDWAVMYKKIKNVGVFNSPEGLLKEVPLQDVRLNEDSIHARAQQTNLDYLLMLDVDRLLWSFRKTAGLPTPGTPYGGWEGPEVELRGHFVGHYLSASALMWASTQNDILRQRMSAVVTGMSACQEKIGSGYLSAFPSEFFDRFEAIQPVWAPYYTIHKILAGLLDQHTFAGNPQALKMVTWMVDYFYNRVMNVIARFTINRHYESLNEETGGMNDVLYKLYRITGDSKHLVLAHLFDKPCFLGLLAVQANDIADLHSNTHIPILVGSQERYEIIGDPLYKEIGTFFMALVNSSHSYATGGTSVHEFWRDPKRIADNIRTTETEESCTTYNMLKVSRHLFRWTKEISYADYYERALTNGVLSIQRGTDPGVMIYMLPQGVGFSKAKTGHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGKNPTLYIIQYISSSFDWKSGKILISQTVVPAVSWDPYLRVSFIFSPAESTSSTLNFRIPSWTHLDGAKAVLNAEVLSLPAPGKFLSITRQWLAGDKLTLQFPITLRTEAIKDDRPDYVSVKAILYGPYLLAGHTSGGDWELKDGGNSNWITPIPASYNSQLISCAQNFEKSTYVLANSNQTLAMQILPQPGTDLAPRSTFRLVPKESNGTSVMLEPFDLPGMYVTEQGPDKSLNIVNFSPGTSSAFSVIPGLDGRNGTISLESESNKGCYVYTGLNSAAGVKLSCMSASNPSFNQATSFVALDGISQYNPVSFVAKGANRNFLLEPLFKFRDEHYTVYFNIQD* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0187 846 PANTHER PROLINE-TRNA LIGASE (DUF1680) 10 845 - -
Apr5g0187 846 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Apr5g0187 846 PANTHER - 10 845 - -
Apr5g0187 846 Gene3D - 708 838 - -
Apr5g0187 846 Pfam Beta-L-arabinofuranosidase, GH127 112 634 IPR012878 -
Apr5g0187 846 SUPERFAMILY Six-hairpin glycosidases 156 480 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0187 Apr-Chr5 1695872 1701072 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0187 K09955 - gmx:100783150 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0187 5 1695872 1701072 Apr2g2349 2 28306803 28311899 PCT