LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0161	ATGGCGAACAGGAACTTGGAAAAGATGGCATCCATTGATGCTCAGCTTCGGCTTTTGGTTCCAGCCAAAGTGAGTGAGGATGATAAACTTGTTGAGTATGATGCTTTACTTCTGGATCGGTTCCTTGATATTCTCCAGGATTTACATGGGGAGGATCTGAAGGAAACGGTTCAAGAGGTATATGAGCTTTCTGCTGAGTATGAAGGAAAGCATGATCCAAAGAAACTGGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCAATTGTTGTGGCCAAGTCCTTTTCCCATATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAAATCGCTCACCGCCGAAGGAACAAGTTGAAGAAAGGGGATTTTGCGGACGAGAACAATGCTACCACTGAATCAGACATTGAAGAAACCCTTAAGAAACTTGTTGTGGATATGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGATCTGGTTCTCACTGCTCATCCTACTCAATCAGTTCGTAGATCTTTGCTTCAAAAGCATGGAAGGATAAGAAATTGTTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGATGAAGCTCTACAGAGGGAGATCCAAGCTGCTTTCCGTACTGATGAAATCAGGAGGACCCCTCCAACTCCACAAGATGAAATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCACATTTCTGCGTCGTGTTGACACAGCTTTGAAAAACATAGGGATTAATGAACGTGTCCCTTATAATGCTCCACTCATTCAATTTTCTTCATGGATGGGTGGAGATCGTGATGGCAATCCTAGAGTAACTCCTGAAGTGACCAGGGATGTTTGTTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAGGATCTTATGTTTGAACTGTCAATGTGGCGCTGCAACGATGAGCTACGTGTCCGCGCTGATGAACTTAACAGGTCTTCCAAGAAAGATGCAGTTGCAAAACACTACATAGAATTTTGGAAAATCATTCCTCCAAACGAACCATACCGTGTGGTACTTGGCGAAGTAAGGGATAGGCTCTACCAGACTCGTGAGCGATCGCGTCATTTGCTCGCCCATGGGTACTCTGACATTCCAGAGGAAGAAACTTTCACCAATGTTGAAGAGGCTACGCCAGAGTTGGAGTATGGAAGGATGAACATTGGAAGTCGACCAGCAAAGAGAAAGCCAAGTGGAGGCATAGAGACACTGCGTGCTATACCTTGGATCTTTGCATGGACACAAACAAGGTTTCATCTCCCAGTGTGGCTAGGCTTTGGAGCAGCATTCAAACATGTTATTGGGAAGGATGTTAGGAATATTCATGTGCTTCAAGAGATGTACAATCAATGGCCTTTCTTTAGAGTCACTCTTGATTTAGTTGAAATGGTGTTTGCCAAAGGAGACCCAGGGATAGCTGCTCTCTATGATAGACTCCTTGTTTCAAAAGATTTGTGGCCATTTGGGGAGCAGTTGAGGACCAAGTATGAAGAAACTAAGAAACTCCTCCTTCAGGTGGCTGGCCATAAGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTTCGCCTGCGTGATTCATACATCACTACCCTTAATGTGTGCCAAGTTTACACTTTGAAACGTATCCGTGATCCAAATTATAATGTGAAGCTGCGCCCTCACATCTCTAAGGAGTCTAGAGATATAAGTAAACCTGCTGATGAACTTATAACACTGAACCCAACAAGTGAATATGCCCCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGGATGCAAAACACTGGTTAA	1905	0.4367	MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFADENNATTESDIEETLKKLVVDMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSKKDAVAKHYIEFWKIIPPNEPYRVVLGEVRDRLYQTRERSRHLLAHGYSDIPEEETFTNVEEATPELEYGRMNIGSRPAKRKPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIGKDVRNIHVLQEMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDRLLVSKDLWPFGEQLRTKYEETKKLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQVYTLKRIRDPNYNVKLRPHISKESRDISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0161	634	Pfam	Phosphoenolpyruvate carboxylase	36	407	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr5g0161	634	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	407	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr5g0161	634	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	408	634	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr5g0161	634	Coils	Coil	104	124	-	-
	Apr5g0161	634	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	168	179	IPR018129	-
	Apr5g0161	634	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	406	634	IPR015813	GO:0003824
	Apr5g0161	634	Gene3D	Phosphoenolpyruvate/pyruvate domain	308	419	-	-
	Apr5g0161	634	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	407	IPR015813	GO:0003824
	Apr5g0161	634	PRINTS	Phosphoenolpyruvate carboxylase signature	167	180	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr5g0161	634	PRINTS	Phosphoenolpyruvate carboxylase signature	220	236	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr5g0161	634	PRINTS	Phosphoenolpyruvate carboxylase signature	280	295	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr5g0161	634	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	408	634	-	-
	Apr5g0161	634	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0161	Apr-Chr5	1404775	1411841	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0161	K01595		-	gmx:547769	798.505

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g0161	5	1404775	1411841	Apr5g0161	5	1404775	1411841	ECH
	Apr2g0457	2	5267003	5273599	Apr5g0161	5	1404775	1411841	PCT
	Apr5g0161	5	1404775	1411841	Apr2g1857	2	24163824	24169775	PCT