LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g1857	ATGGGTAGTCGTAACATTGAGAAGATGGCCTCAATTGATGCTCAGTTGAGGTTGCTAGCACCACGCAAGGTCTCTGATGATGACAAACTCGTTGAGTATGATGCTTTGTTGTTGGATCGCTTCCTTGACATTCTTCAGGACTTGCACGGTGAAGATATTAGACAAACGGTTCAAGATTGTTATGAGCTGTCAGCTGAGTATGAAGGGGAGCATCGACCTGATAAGTTGGAGGAACTTGGAAATATGTTGACTGGACTTGATGCAGGGGATTCAATTGTCATTGCTAAATCTTTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCATACAGAAGAAGGATCAAGTTATTGAAGAAGGGTGACTTTGCTGATGAGAACTCTGCCATGACTGAGTCAGACATTGAAGAAACCTTCAAGAAGCTTGTGTCTCAGCTGAAGAAGACCCCTCAGGAAATATTTGATGCTTTGAAGAACCAAACTGTGGATTTGGTCCTAACTGCTCATCCTACTCAGTCTGTTCGCAGATCTTTGTTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACGCAATTGTATGCTAAAGACATAACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACAGATGAAATTCGAAGGACTGCTCCTACACCACAAGATGAGATGAGAGCTGGAATGAGCTACTTTCATGAGACAATATGGAAAGGGGTACCAAAGTTTCTACGCCGAGTCGATACAGCACTGAAGAACATGGGAGTAAATGAACGTGTCCCATATAATGCTCCAGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAATCCCAGAGTAACCCCTGAAGTTACAAGGGATGTGTGTTTGCTTGCTAGAATGATGGCTGCTAACATGTACTTCTCTCAGATAGAGGATCTTATGTTCGAGTTGTCTATGTGGCGCTGCAATGACGAGCTCCGTGTTCGTGCTCATGAACTGCATAGGTCCTTAAAGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCAAATGAACCTTATCGTGTTATTCTTGGTGATGTCAGAGACAAACTGTACAATACACGCGAACGTGCTCGCCAGTTATTAGCCAATGGGACCTCTGACATCCCTGAAGAAACAACCTTCACTAATGTTGAGCAGTTCCTAGAGCCTCTAGAGCTATGTTACAGGTCTCTTTGTGCATGTGGTGATCGACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGAGGCAAGTTTCTACATTTGGACTTTCACTTGTAAGACTTGACATCCGTCAAGAATCGGATAGGCACACTGATGTTATGGATGCAATTACGAAACACTTGGAGATTGGATCTTATCGTGAATGGTCAGAAGAACGCAGGCAAGAATGGCTCTTGTCTGAGCTAAGTGGAAAGCGCCCCCTCTATGGATCTGATCTTCCAAAAACAGAAGAAATTGCTGATGTTTTGGAAACCTTCCATGTCATTGCAGAACTTCCCTCAGACAACTTTGGTGCTTACATTATCTCAATGGCAACAGCACCATCTGATGTGCTTGCTGTTGAGCTTCTACAACGCGAATGTAATGTGAAGCAGCCATTAAGAGTGGTGCCATTATTTGAAAAGCTTGCTGATCTTGAGGCTGCACCTGCTGCAGTGGCTAGGCTTTTCTCTATAGATTGGTACAGAAACCGGATCAATGGGAAACAAGAAGTTATGATAGGATACTCAGACTCAGGAAAAGATGCAGGCAGGCTTTCGGCGGCTTGGGCGCTTTACAAGGCTCAAGAGGAACTTGTGAAGGTTGCAAAGGAGTTTGGTGTTAAGCTAACAATGTTTCATGGCAGAGGAGGGACTGTTGGAAGAGGAGGAGGTCCTACTCATCTTGCTATTTTGTCTCAGCCACCAGACACTATTCATGGATCACTCCGAGTAACAGTTCAAGGTGAAGTTATTGAGCAGTCCTTTGGAGAGGAGCACTTGTGCTTTAGAACTCTTCAGCGTTTCACAGCTGCTACACTTGAGCATGGCATGCATCCTCCTGTGTCACCAAAACCAGAATGGCGTGCCCTCATGGATGAGATGGCTGCCATTGCAACTAAGGAATATCGCTCTGTTGTTTTCCAAGAGCCTCGCTTTGTTGAGTACTTCAGATGTGCAACTCCTGAGTTAGAGTATGGAAGAATGAACATTGGTAGTCGTCCATCAAAACGGAAACCAAGTGGAGGAATTGAATCACTACGTGCCATTCCTTGGATTTTTGCTTGGACACAAACAAGGTTCCACTTACCAGTATGGCTTGGTTTTGGTAAAGCATTTAAACATGTGGTTGAGAAAGATCCAAAGAATCTCCTAATGCTTCAGGATATGTACAATCAATGGCCTTTCTTTAGGGTCACCCTTGACTTAGTTGAGATGGTGTTTGCCAAGGGAGACCCAGGGATTGCTGCCTTATATGACAAACTCCTAGTATCAGCAGAGCTATGCCCATTTGGAGAGTGCTTAAGAGCTAAATATGAAGAAACCAAGAGCTTTCTCCTCAAGGTTGCTGGGCACAAGGATATTCTAGAAGGAGACCCTTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATTACAACCCTGAATGTGTTGCAAGCTTACACATTGAAGCAAATACGTGATCCTGATTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCAGCTGCAGAGCTTGTTAAACTCAACCCAAAAAGCGAGTATGCTCCTGGTCTTGAGGACACCCTTATTTTGACCATGAAGGGTATTGCTGCTGGCATGCAAAATACCGGTTAA	2901	0.4388	MGSRNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHRPDKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAMTESDIEETFKKLVSQLKKTPQEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTAPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNMGVNERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFELSMWRCNDELRVRAHELHRSLKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYREWSEERRQEWLLSELSGKRPLYGSDLPKTEEIADVLETFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECNVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDEMAAIATKEYRSVVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGKAFKHVVEKDPKNLLMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDKLLVSAELCPFGECLRAKYEETKSFLLKVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKQIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG*	967

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g1857	966	Gene3D	Phosphoenolpyruvate/pyruvate domain	309	444	-	-
	Apr2g1857	966	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	966	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	168	181	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	221	237	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	281	296	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	441	461	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	590	610	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	632	661	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	PRINTS	Phosphoenolpyruvate carboxylase signature	764	790	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	Pfam	Phosphoenolpyruvate carboxylase	36	966	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Apr2g1857	966	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	592	604	IPR033129	-
	Apr2g1857	966	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	966	IPR015813	GO:0003824
	Apr2g1857	966	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	169	180	IPR018129	-
	Apr2g1857	966	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	966	-	-
	Apr2g1857	966	Hamap	Phosphoenolpyruvate carboxylase [ppc].	23	966	IPR022805	GO:0006099\|GO:0008964\|GO:0015977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g1857	Apr-Chr2	24163824	24169775	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g1857	K01595		-	gmx:547756	1855.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr2g1857	2	24163824	24169775	Apr2g1857	2	24163824	24169775	ECH
	Apr5g0161	5	1404775	1411841	Apr2g1857	2	24163824	24169775	PCT