Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0113 ATGGAGGGTTCTTCTTGGAAGAAGTGTTTCAGTTCTACGGCCTTAGATAGTTTTGGAGGCTTAAATAGGAGCCCAGAGCCTCATGAAAGAAACCCCTTTTCTGGTGAGGAGTCAAAGGATTCTAGCTTCAAAAATGAGAGAGACAGGGTTGTGTTTGCACAAGGTGATAAACATGAAAACCTTGGTGGTTTTCTTGGGGATGAAGAAGTAGGGGTTGACCCTTTTGTTTATGCTATAGAATGTGGTGATAATAGCTTGAGGCTATGGTTAGACAAACCTGAACGAACAGTGAATGTTTTAGAGTGCTTGCACATTTTTAGGCAGATAGTAGAGACTGTTCATGTGGCTCATTCTCAAGGACTTGTTTTTCATAATGTGCGGCCCTCCTGCTTTGCTATGTCGTCTTTCAACCGTGTCTCATTTATTGAGTCAGCATCTTGTTCACATTTTGGATCAGATACCTCAGAAGAAGATGGATTAAACCACCAAGCTGTTGATATTAAAATGCCAACACCTATCCATCTCAATGATGTGCATCATCAGAGATGTTTAGGAAGTGAAGATTCTGTACCTGTTGAGACTACTACAACAACTGCTTTGTCGGACTCTAGTTGTGTGATTTCAAGTGCAGTGTTTGCAGCGCCTAAATCATTAATAGAAGAGACAGAAGAAAATAAAATGAAAAATAGGAGAAAGGCTGAGGAAGTTGTTGGAAAGAAGCAATCATTTCCAACGAAACAGGTACTGCTGATGGAGGCAAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTGCTCCAAGTTCCTGTGCTTCAGATGTTTACCGATTGGGAGTTCTCCTTTTTGAGCTATTCTGTCCACTTAGCTCAAGTGAAGAAAAGAGCAGAACCATGTCCAGCCTTAGACATAGAGTTCTTCCTCCACAATTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTGCTACATCCTGAGCCGAGTGGTCGTCCAACATTGGGGGAGTTGTTGCAGTGTGAGTTTCTTAATGAACCGAGAGATGATATGGAAGAGCGTGAAGCTGCAGTAGAACTCAGAGAAAGGATAGATAATGAGGAGTTGTTGCTAGAGTTCCTTTTGTTAATTCAACAGAAAAAAGGGGAAGCTGCTGAGAAGTTGCAACATACTATCTCTTTTCTGCATTCAGATATTGAAGAAGTGACTAAACAGCAAACTGTATTTAAAGCGGTAACTGGCATTGGACTAGGGAGTGATGATTGTGCAGCATCAAGTTTCCCATCCATTACAGTTGTTGATAATGAGGATTCTGCTTGTCTAAGAACCAGAAAACGGGTCAGACCAGATCTGTGTGTTGACAGCACTGAGGGATGCAATAATAACATATGCAATGATCAGAAAAATCATGGAAGTATTCTTTCAAAAAATCCACGACTTTTGAAGAACTTGACGAAGCTAGAGTCAGCATACTGTTTTACACGATGCAGATCTGCCTATTCCTTGGGGAAACTTGTGGCTACACATTCACCTATAGCTACTGATGATAGAGGGTCTGTTGTTGTGACTCCAAGGAGTTGTGTCAATAAAGTAGTGTCAAAAGAGCAGTGTAGAGAGGGAAAAAGCCCTTGGATAAATCCTTTCCTTGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGTTGAAGGTTAAGGGTGACCTGAAACAAGGAGATCTTTTGCAGTCTTCCAGCCTGATATGCTCTCTCAGTTTTGATCGTGATGCAGAATTTTTTGCAACTGCTGGTGTAAATAAGAAAATTAAAGTTTTTGAATGTGACACAACCATAAACGAGGACTGTGATATCCACTATCCAGTAGTGGAGATGGTTAGCCGGTCAAAGTTGAGCAGTATATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTGCAGTCTGAAATGATGGAGCATGAGCAGCGGGTATGGTCCGTTGATTTCTCATCAGCTGATCCAACAATGTTGGCAAGTGGGAGTGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTAAGTGTTGGCACCATAAAAACGAAGGCAAATGTGTGCTGTGTTCAGTTCCCCCTTGATTTTGCTCGTTTCCTTGCATTTGGCTCAGCAGATCATCGGATATATTACTATGATCTTCGCAACCTGAAAATGCCTCTCTGTACACTAGTTGGACATAATAAAACAGTGAGCTACATCAAATTCATAGACACTGTGAACCTAGTCTCTGCATCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTCTGTGTTCAGCTCGTGTAATAGACTCGCCAATTCAATCTTTCACTGGTCACTTAAATGTTAAGAACTTTGTAGGGTTGTCTGTATCTGATGGTTACATTGCTACCGGTTCAGAGACAAACGAGGTGTTCATATATCACAAGGCTTTTCCCATGCCAGCATTATCATTCAAATTTTACAGTTCTGGGAATGAAGTGGATGATTCTTCACAGTTCATCTCTTCTGTTTGTTGGCGCGGTCAATCCTCCACCTTACTTGCTGCAAATTCCACAGGCAATGTCAAAATTCTGGAGATGACTTAA 2646 0.4116 MEGSSWKKCFSSTALDSFGGLNRSPEPHERNPFSGEESKDSSFKNERDRVVFAQGDKHENLGGFLGDEEVGVDPFVYAIECGDNSLRLWLDKPERTVNVLECLHIFRQIVETVHVAHSQGLVFHNVRPSCFAMSSFNRVSFIESASCSHFGSDTSEEDGLNHQAVDIKMPTPIHLNDVHHQRCLGSEDSVPVETTTTTALSDSSCVISSAVFAAPKSLIEETEENKMKNRRKAEEVVGKKQSFPTKQVLLMEASWYTSPEEVAGAPSSCASDVYRLGVLLFELFCPLSSSEEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSGRPTLGELLQCEFLNEPRDDMEEREAAVELRERIDNEELLLEFLLLIQQKKGEAAEKLQHTISFLHSDIEEVTKQQTVFKAVTGIGLGSDDCAASSFPSITVVDNEDSACLRTRKRVRPDLCVDSTEGCNNNICNDQKNHGSILSKNPRLLKNLTKLESAYCFTRCRSAYSLGKLVATHSPIATDDRGSVVVTPRSCVNKVVSKEQCREGKSPWINPFLEGLCKYLSFSKLKVKGDLKQGDLLQSSSLICSLSFDRDAEFFATAGVNKKIKVFECDTTINEDCDIHYPVVEMVSRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVQSEMMEHEQRVWSVDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDFARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFIDTVNLVSASTDNTLKLWDLSLCSARVIDSPIQSFTGHLNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSSGNEVDDSSQFISSVCWRGQSSTLLAANSTGNVKILEMT* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0113 881 Gene3D Transferase(Phosphotransferase) domain 1 81 354 - -
Apr5g0113 881 ProSiteProfiles Protein kinase domain profile. 1 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0113 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 782 IPR001680 GO:0005515
Apr5g0113 881 PANTHER PROTEIN SPA1-RELATED 2 5 881 IPR044630 GO:0009640
Apr5g0113 881 PRINTS G protein beta WD-40 repeat signature 640 654 IPR020472 -
Apr5g0113 881 PRINTS G protein beta WD-40 repeat signature 683 697 IPR020472 -
Apr5g0113 881 PRINTS G protein beta WD-40 repeat signature 767 781 IPR020472 -
Apr5g0113 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 700 - -
Apr5g0113 881 SUPERFAMILY WD40 repeat-like 574 879 IPR036322 GO:0005515
Apr5g0113 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 705 IPR001680 GO:0005515
Apr5g0113 881 MobiDBLite consensus disorder prediction 29 44 - -
Apr5g0113 881 Gene3D - 549 881 IPR015943 GO:0005515
Apr5g0113 881 SUPERFAMILY Protein kinase-like (PK-like) 57 351 IPR011009 -
Apr5g0113 881 Pfam WD domain, G-beta repeat 665 696 IPR001680 GO:0005515
Apr5g0113 881 Pfam WD domain, G-beta repeat 745 780 IPR001680 GO:0005515
Apr5g0113 881 PANTHER PROTEIN SPA1-RELATED 3 5 881 - -
Apr5g0113 881 MobiDBLite consensus disorder prediction 14 44 - -
Apr5g0113 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 782 - -
Apr5g0113 881 ProSitePatterns Trp-Asp (WD) repeats signature. 767 781 IPR019775 -
Apr5g0113 881 SMART WD40_4 568 603 IPR001680 GO:0005515
Apr5g0113 881 SMART WD40_4 614 653 IPR001680 GO:0005515
Apr5g0113 881 SMART WD40_4 840 879 IPR001680 GO:0005515
Apr5g0113 881 SMART WD40_4 742 780 IPR001680 GO:0005515
Apr5g0113 881 SMART WD40_4 656 696 IPR001680 GO:0005515
Apr5g0113 881 SMART WD40_4 699 738 IPR001680 GO:0005515
Apr5g0113 881 SMART WD40_4 789 828 IPR001680 GO:0005515
Apr5g0113 881 Coils Coil 384 404 - -
Apr5g0113 881 SMART serkin_6 7 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0113 Apr-Chr5 992918 1001382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0113 649 782 Miscellaneous Gene Families AT5G08390 30.147 4.02e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0113 - - gmx:100811457 1323.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0400 2 4683039 4688636 Apr5g0113 5 992918 1001382 ECH
Apr5g0113 5 992918 1001382 Apr5g0113 5 992918 1001382 ECH