Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0400 ATGTGTTGTTGCGCCTGGCCCACATGCAACTCTAAGTGGATAAAGATGGATGGTTCTTCTGGGTCTGCTTTGCAGAATTCTGACAATTCTAGGGCGTTGAATAGTTCTGGAGTCTCAGGTAGGAACCAAAGGCTTCATTGTCCTGAAAGAAACCCCTTCTCTGGTGAGGCATCACAGGATTCTGGGTTTAAAAAGGAAAGGGATAGGGTTCTGTTGGCACAAGGTGATCAGCTTAAAAATCTGGGTGGTTTTTCTGGGTTTTGTGAGGATGAAATCGAGGTTGACCCCTTTTTTTGCTCTGTAGAATGGGGTGATCTTAGTTTGAGGCAATGGTTAGATAAACCTGAACGATCAGTGGATGCCTTCAAATGCTTGCACATATTTAGGCAAATAGTTGAAATCGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGCTTTGTCATGTCATCTTTCAACCTTATCTCGTTTATTGAATCAGCATCTTGTTCGGATACTGGCTCAGATTCTTTAGGAGATGGATTGAACAGCCAAGGGGTTGAGATGAAAACTCCAACATCTCTGTGTCCCCATGATATGAATCAGCAGAGTGTAGGAAGTGAAGATTTTACGCCCATCAAAACTTCTACAACAACTGCTCTGTCAGATTCTAGTTGCATGCTTTCGAGTGCTGTGTATGCTGCTCGCGCATCTTTAATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGAAAGGATGAAGAAGTGGAAGGAAAGAAGCATTCATTTCCTATGAAACAGATACTGCTAATGGAGATGAGCTGGTACACTAGTCCTGAAGAGGTAGCTGGTGCTTATAGTTCATGTGCTTCGGATGTTTATCGTTTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCGCTCACCTCAAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACACAGAGTTCTTCCCCCACAAATACTTCTGAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCTAGCAGTCGTCCAACACTGGGCAGGGAGTTGTTGGAGAGCGAGTTCCTTAATGAACAGAGAGATGATTTGGAAGAACGTGAAGCAGCAATTGAACTGACACAAAGGATAGAGGATCATGAGTTGTTGCTAGAATTCCTTTTGTTACTTCAACAGAGAAAACAGGAAGTTGCTGATAAGTTGCAACATACTATCTCTTTTCTGTGTTCTGATATTGAAGAAGTGACCAAGCAGCAAACTAGATTTAAAGAGATTGCTGATACTGAACTTGGGAATGATGATCGTACAGCATCAAGTTTCCCATCCAAGACAGTGGTTGATAGTGAGGATTCTGCTTCTCTAGGGACTAGAAAACGAGTCAAACTAGGGGTGCATATTAATAAAAACATTGAGGAATGTGATGATTACATAGGGGATAATCAGAAAACTAAAGAAAATTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTCAAGAAACTTGAGTCTGCATACTTTTTAACACGATGTAGACCAGCTTATTCCTCAGGGAAACCGACGAGTAGACATCCACCTGCAAATGATCGTAGAGGGTCTGTTGTCATGACTGAAAGAAGTTGCATTAATGACTTGACATCAAAAGAGCAGAGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTCCTTGAGGGTTTGTGCAAGTACTTATCATTCAGTAAGCTAAAGGTTAAAGCTGACCTGAAGCAAGGAGATCTTTTGCACTCTTCCAACCTCGTATGCTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCCGGTGTGAATAAGAAAATTAAAGTGTTTGAATGTGATGCAATCATAAATGAGGATCGTGATATCCATTATCCAGTAGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTATATGTTGGAATACATACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAAGGTGTTGTACAGTTATGGGACGTGACAAGAAGTCAAGTACTATCTGAAATGAGGGAGCATGAGCGGCGGGTGTGGTCCATTGATTTCTCGTCAGCAGACCCAACAATGTTGGCTAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACAAAGGCAAATGTATGCTGTGTTCAGTTCCCTCTGGATTCTGCTCGTTTCCTTGCGTTTGGTTCAGCAGATCACCGAATATATTACTATGATCTTCGCAACCTAAAAATGCCACTCTGCACTTTAGTTGGACATAACAAGACTGTGAGCTACATCAAATTTGTAGACACTGTGAACCTTGCCTCTGCATCCACAGACAACACTTTGAAGCTTTGGGATTTATCCGCGTGTGCTTCTCGAGTTATAGACTCACCAATTCAATCATTTATGGGTCACATGAACGTTAAGAACTTTGTGGGATTGTCAGTATCTGATGGTTATATTGCTACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAAGCCTTCCCCATGCCAGCATTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCTGGTCATGAAGTGGATGACGCGGCACAGTTTGTGTCCTCCGTTTGCTGGCGCGGTCAGTCATCGACCTTACTTGCTGCAAATTCCACAGGGAATGTCAAAATTCTAGAGATGGTTTAA 2721 0.4186 MCCCAWPTCNSKWIKMDGSSGSALQNSDNSRALNSSGVSGRNQRLHCPERNPFSGEASQDSGFKKERDRVLLAQGDQLKNLGGFSGFCEDEIEVDPFFCSVEWGDLSLRQWLDKPERSVDAFKCLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNLISFIESASCSDTGSDSLGDGLNSQGVEMKTPTSLCPHDMNQQSVGSEDFTPIKTSTTTALSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKHSFPMKQILLMEMSWYTSPEEVAGAYSSCASDVYRLGVLLFELFCPLTSREEKSRTMSSLRHRVLPPQILLKWPKEASFCLWLLHPDPSSRPTLGRELLESEFLNEQRDDLEEREAAIELTQRIEDHELLLEFLLLLQQRKQEVADKLQHTISFLCSDIEEVTKQQTRFKEIADTELGNDDRTASSFPSKTVVDSEDSASLGTRKRVKLGVHINKNIEECDDYIGDNQKTKENFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKPTSRHPPANDRRGSVVMTERSCINDLTSKEQSREGASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDAIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLASASTDNTLKLWDLSACASRVIDSPIQSFMGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0400 906 Coils Coil 354 381 - -
Apr2g0400 906 Gene3D Transferase(Phosphotransferase) domain 1 105 374 - -
Apr2g0400 906 ProSitePatterns Trp-Asp (WD) repeats signature. 788 802 IPR019775 -
Apr2g0400 906 PANTHER PROTEIN SPA1-RELATED 3 16 906 - -
Apr2g0400 906 SUPERFAMILY Protein kinase-like (PK-like) 77 355 IPR011009 -
Apr2g0400 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 589 624 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 635 674 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 763 801 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 860 904 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 810 849 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 720 759 IPR001680 GO:0005515
Apr2g0400 906 SMART WD40_4 677 717 IPR001680 GO:0005515
Apr2g0400 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 770 803 IPR001680 GO:0005515
Apr2g0400 906 SUPERFAMILY WD40 repeat-like 594 903 IPR036322 GO:0005515
Apr2g0400 906 ProSiteProfiles Protein kinase domain profile. 9 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0400 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 770 803 - -
Apr2g0400 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 721 - -
Apr2g0400 906 SMART serkin_6 13 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0400 906 Pfam WD domain, G-beta repeat 766 801 IPR001680 GO:0005515
Apr2g0400 906 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Apr2g0400 906 Pfam WD domain, G-beta repeat 594 623 IPR001680 GO:0005515
Apr2g0400 906 MobiDBLite consensus disorder prediction 20 62 - -
Apr2g0400 906 Gene3D - 570 906 IPR015943 GO:0005515
Apr2g0400 906 MobiDBLite consensus disorder prediction 20 42 - -
Apr2g0400 906 PRINTS G protein beta WD-40 repeat signature 661 675 IPR020472 -
Apr2g0400 906 PRINTS G protein beta WD-40 repeat signature 704 718 IPR020472 -
Apr2g0400 906 PRINTS G protein beta WD-40 repeat signature 788 802 IPR020472 -
Apr2g0400 906 PANTHER PROTEIN SPA1-RELATED 2 16 906 IPR044630 GO:0009640
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0400 Apr-Chr2 4683039 4688636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0400 674 848 Miscellaneous Gene Families AT5G08390 25.140 9.45e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0400 - - vra:106755001 1628.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0400 2 4683039 4688636 Apr5g0113 5 992918 1001382 ECH
Apr2g0400 2 4683039 4688636 Apr2g0400 2 4683039 4688636 ECH