Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0001 ATGGAGTCGATCCTGGGAAGAGCTCTGGAGTACACTCTCAAGTACTGGCTTAAGTCATTCTCCAGAGACCAGTTCAAGTTGCAGGGTCGCACCGTTCAGCTTTCAAACTTAGATTTGAACGGGGATGCATTGCATTCCAGCGTTGGATTGCCACCCGCGCTCAATGTCACCACAGCCAAAGTTGGCAAATTGGAGATTATGCTGCCGTCAGTGAGCAATGTACAGATAGAGCCAATCGTTGTGCACATTGATAGGCTTGATTTGGTTATCAAGGAGAATTCTGATTTCGAACAATCTGAAACTCCAACCAGTGCCTCTGTCAAGGGTAGCGGATATGGTTTTGCTGATAAGATTGCAGATGGAATGACTATACAGATCCACTCAGTTAATCTATTGCTTGAAACACTTGGAAGTGCTAGTTGCCAAGGAGGAGCTACGTGGGCACCACCTATGGCATCTATCACGATACACAACCTTTTATTGTATACCACAAATGAAAGCTGGAAGGTTGTAAATCTTAAGGAGGCTCGGGAGTTTTCCAGTAATAAGAAGTATATATATGTTTTCAAAAAACTAGAATGGGAATCTTTGTCTATTGATCTTTTGCCTCATCCTGACATGTTCACGGATGCTACTTTAGGCCATACTCAAGAAGGAGAAAACCTGAGAGATGATGATGGTGCAAAGCGAGTTTTCTTTGGAGGCGAGCGTTTTATAGAAGGAATATCAGGAGAAGCTTATATCACAGTTCAGAGAACTGAATTGAACAGTCCACTTGGGCTTGAGGTTCAGTTACATGTCACAGAAGCTGTTTGCCCTGCATTAAGTGAACCGGGACTCCGTGCACTTCTCCGCTTTATGACAGGAGTATATGTTTGTCTAAGCAGGGGCAATGTAGCTTTCAACGCCCAGCAGCGATCAACCGAAGCTGCTGGGCATTCTCTTGTCTCAATTGTTGTTGACCATATATTTCTTTGCATTAAAGACTCTGAATTCCAGCTTGAGCTTTTAATGCAGTCCCTCCATTTTTCTCGGGTCAGTCTTTCTGAAGGAGATAATGACAGTAACTTAACCAGAATTACAATTGTTGGACTATTTTTGAGGGACACCTTTTCACACCCTCCATTTACCTTAGTGCAACCATCAATGCAATCTGTCACAGGAGATGCTTTACAAGTGCCAGAATTTGCTAGAAGCTTCTGCCCTCCAATATATCCTCTAGGAGATCAGCAGTGGCAATTAATTGAGGGAACTCCTCTACTGTGCCTCTATTCCCTTCAGCTCGTGCCTTCTCCACTTCCACCATCCTTTGCATCTCAAACAGTTATTGACTGTCAACCTCTTATGATTCACCTCCACGAAGAATCCTGCCTGAGGATATCATCTTTCTTAGCTGATGTTATTGTTGTCAATCCTGGTGAAATTTTACCAGATTTCTCACTAAAATCTTTTATTTTCACTCTCAAGGGACTGGATATTTCAGTTCCTTTGGTTAATACCCAACTGGATATTTCTAAAACCATCATGGAAAACACAGTCAAGACCACCTTTACTGGAGCAAGGCTTCATATTGAAAACCTTTTCTTTTTAGATTCACCATCAATGAAGTTAAGAATACTGAACCTGGAGAAGGATCCCGCTTGCTTCTGTCTTTGGGAAGATCAACCAATTGATGCTTGTCAAAAGAAGTGGACTGCCAGAGTATCCCAGCTTACTTTATCTCTGGAAGCAAGTACTGGCAAGCTTGGACATCAGAGTTCTCTTGGATGGACTGCTGGACTGTGGAGATGTGTTGATTTGAAAGATGCTCACATAGAAGTGGCTATGGTAACTGCTGATGGAAGTCCGATGTTGAAGGTTCCTCCTCCCGGGGGTATTGTGAGGGTTGGTATTGCTTGTGAACAGTATCTATCCAACTCTTCCATTGAACAGTTATTTTTTGTCCTGGATCTCTATACTTATTTTGGGAGATTTAGCGAGAAAATAGCGATAGCTGGAACAAGAAAACATTTGAAGGGTGTTAGGAACAAATCTTTTAGTGGAAAGCTGATGGACAATATTCCTAGTGACACTTCTGTATGTTTGGCAATAAAAAACCTCCAACTTCAATTTCTTGAGTCATCTTCTGTGAATGCTGTAGGAATGCCTCTACTACAGTTTGTCGGAGATGATCTGTATGCTAGTGCCACTCATAGAACCTTTGGTGGTGCTATTGTTGTTTCATCCACTTTAACTTGGGAAAGTGTTGAGATAGATTGTGTGGATACTGAGGAGCACTTGGCATGTGAAAATGACTCTTTCTTTAGTACTGGAGAAAAAATTTGCTCAATTAGTGATAATGGATACCCTCAACTGAGACCTATTTTCTGGGTTCATAGCAACAAGAACTATCTTTTTAAGGAAAATACCCATTCATTCCGGTTTCTGGACATAACTATGGTGCATGTCATACCATTTTGTGAAGTAGACTTGGAGTCGCATTCTTTGAATGTCTCCGCTTTTGTATCTGGTGTTCGTCTTGGTGGGGGAATGAACTACACTGAAGCCCTCCTGCAACGATTTGGAATACTCGAGTCCGATGGTAGTCTAGGAAAGGGTCTGTCTAAATGGTTGGAAAACATACAAAGAGGACCATTGGCAAAACTTTTTAACACAATGCCTATAATTGTTGATAATTCAAAAGATGTTGAAAATATGAGAGAAGGAAATGAAACCAGTTCTCCACACTTGAAGAAGCCAGATAATGTGGATGTAACTATAGAATTGAGAGATTGGTTATTTGCCCTTGAAGGTGCACAAGAGATGGCTGAAAGATGGTGGTTCTCAAGCCTCGAAGATGTAAACAGAGAAGAGAGGTGTTGGCACACTGCTTTCCGTACTTTACAAGTAAATGCAAAAAGTAGCCCAAAGAATGCTCCAGACAGAAAATTACAATCACATAGAATACGACCATATCCTGTGGAACTGGTTACGGTTGTCGTTAAAGAGCTACGGATCATGAAGCCCCATACCCAAAAAAACATTCCTCCTTCATTGTTAACTGCAAATGGAGTTGAAGAGTTCACTGACAAAGTTGGTGGTATTGATCTTGAAGTGCGATTGATAGTATGTGAGGATAATGAAGCTGATGAAATGGTTGATTGGGAAGTGGAAAACCTAAAATTCTCTATAAAGCAACCGATTGAGGCAGTTATAACAAAGGATGAGGTCCAACACCTAACCTTTTTGTGCAAATCTGAAATAGATTCCATAGGCCGGATAACAGCTGGAATTATACGGCTGCTAAAGCTAGAAGGTTCTGTTGGCCAGTCTGTATTGGATCAGCTTGGCAACCTAGGAAGTGAAGGTTTCGACAATATTTTCTCTCCTGAGAAGCTCAGCATAGATGGTAGTGTTTCTAGCCGAGATCTCTCTCCATTACCAAACCTGATAAAAGAAAGCCAATGCAAAACTATGGAACCAACATTAACTTTGCTAGAGGAAGCAGTTATAGATTCACAAGCTGAGATTAATGCGCTGATCTCTGATATTGGTACTACTGAGTCTTCCTGTCAGCACCTCACTGTGGTCAAAGAACTCGGTAAAAAAATTGAGGCGATGCAGGCTTTATTGACGCAATTACGAGATCAACTTTAA 3636 0.415 MESILGRALEYTLKYWLKSFSRDQFKLQGRTVQLSNLDLNGDALHSSVGLPPALNVTTAKVGKLEIMLPSVSNVQIEPIVVHIDRLDLVIKENSDFEQSETPTSASVKGSGYGFADKIADGMTIQIHSVNLLLETLGSASCQGGATWAPPMASITIHNLLLYTTNESWKVVNLKEAREFSSNKKYIYVFKKLEWESLSIDLLPHPDMFTDATLGHTQEGENLRDDDGAKRVFFGGERFIEGISGEAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFMTGVYVCLSRGNVAFNAQQRSTEAAGHSLVSIVVDHIFLCIKDSEFQLELLMQSLHFSRVSLSEGDNDSNLTRITIVGLFLRDTFSHPPFTLVQPSMQSVTGDALQVPEFARSFCPPIYPLGDQQWQLIEGTPLLCLYSLQLVPSPLPPSFASQTVIDCQPLMIHLHEESCLRISSFLADVIVVNPGEILPDFSLKSFIFTLKGLDISVPLVNTQLDISKTIMENTVKTTFTGARLHIENLFFLDSPSMKLRILNLEKDPACFCLWEDQPIDACQKKWTARVSQLTLSLEASTGKLGHQSSLGWTAGLWRCVDLKDAHIEVAMVTADGSPMLKVPPPGGIVRVGIACEQYLSNSSIEQLFFVLDLYTYFGRFSEKIAIAGTRKHLKGVRNKSFSGKLMDNIPSDTSVCLAIKNLQLQFLESSSVNAVGMPLLQFVGDDLYASATHRTFGGAIVVSSTLTWESVEIDCVDTEEHLACENDSFFSTGEKICSISDNGYPQLRPIFWVHSNKNYLFKENTHSFRFLDITMVHVIPFCEVDLESHSLNVSAFVSGVRLGGGMNYTEALLQRFGILESDGSLGKGLSKWLENIQRGPLAKLFNTMPIIVDNSKDVENMREGNETSSPHLKKPDNVDVTIELRDWLFALEGAQEMAERWWFSSLEDVNREERCWHTAFRTLQVNAKSSPKNAPDRKLQSHRIRPYPVELVTVVVKELRIMKPHTQKNIPPSLLTANGVEEFTDKVGGIDLEVRLIVCEDNEADEMVDWEVENLKFSIKQPIEAVITKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVLDQLGNLGSEGFDNIFSPEKLSIDGSVSSRDLSPLPNLIKESQCKTMEPTLTLLEEAVIDSQAEINALISDIGTTESSCQHLTVVKELGKKIEAMQALLTQLRDQL* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0001 1211 Pfam N-terminal region of Chorein or VPS13 1 101 IPR026854 -
Apr5g0001 1211 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1210 - -
Apr5g0001 1211 PANTHER UNCHARACTERIZED 1 1210 IPR026728 -
Apr5g0001 1211 Coils Coil 1190 1211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0001 Apr-Chr5 17 10187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0001 - - gmx:100803142 1810.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0001 5 17 10187 Apr5g0001 5 17 10187 ECH
Apr2g1817 2 23781420 23790257 Apr5g0001 5 17 10187 PCT