Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2375 ATGCAAAACTCTGTTTCATCTCTCTCACTGGGTTTCCCTCCAAACTCCACACCCAACATCTTCAAAGTCTTCAACTTTAAACTTTCCTCACAATCCCCATCACCCCAATCCACCCAATCACCCCCCAAAATCCATCACAGAAATCTTCCCAGAATCACCACCACCAGCGGGAAACAGAGGAACAAGAACAAAGTGAAACCTTTCGCTGAAAAAGACGCTTTTCCTTGCTCCTTACCCCTTCACACCAAAAACCCAATTTTCATTTACAAAGACATTAAGAGATTCGCTCGCCAGAACAAGCTCAAAGAGGCTCTCACCATTTTGGACTACGTGGATCAACAGGGTATTCCTGTTAATGTCACTACCTTCTCTTCCCTCATTGCTGCTTGCATCCGCACCAAGTCATTGCGAAAAGGAAGGGAAATTCACACCCATATTCGAATCAATGGGCTTGAAGATAACACTTTTTTGCGCACAAAACTGGTTCACATGTACACTTCTTGTGGGTCATTCGAAGATGCTAAGAAACTGTTTGATGAATTGCCCTGTGAGAGTGTGTATCCTTGGAATGCTTTGCTCAGAGGGACTGTGGTTTCGGGTAAGAGAAAGTACATTGATGTGCTCAAAACTTTTTCTGAGATGAGGGCATTGGGAGTTGAGTTGAATGTGTATAGTTTCTCCAGTGTCATCAAGAGCTTTGCCGGCGCACCGGCGCTTTTCCAAGGATTGAAGACTCATGCCCTTTTGATCAAGAATGGTTTGCTTGATAACTACATTATCCGGACTAGTTTGATTGATATGTATTCCAAGTGTGGGAAGATTAAGCTTGCACGTCGCATGTTTGAGGAAATTCCTGAGCGAGATGTTGTTGTGTGGGGGGCGATGCTTGCTGGTTTTGCGCACAACAGGTTGCAGGGAAAAGTGTTGGAGTATGTAAGGTGGATGGTGGAGGAAGGAGTGGAGCTGAATTCGGTTATAGTGACGATTGTTATTCCTGTAATTGGCGAAGTTTGTGCGCGGAGGTTGGGTCAGGAGGTTCATGCTTATGTATTGAAGACAAAATCATACTCTAAGCAAGTGCCAATTCAGTCTGCTTTGATTGATATGTATTGCAAATGTGGGGATATGAGTTCAGCAAGACGAGTTTTCTATAGCTCAAGGGAGAGAAATGTGGTTTGTTGGACAGCTTTGATGTCGGGTTATGCTACAAATGGCAAACTAGAGCAGGCACTAAGGTCCACAATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTGACAGTTGCCACTGTTCTTCCAATTTGTGCTCAGTTGAGGGCTTTGGATCAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATTGGTTTCTGCCTAACGTGTCTGTAACTTCGTTGATGGTAATGTATTCTAAGTGCGGTGTGGTTGAGTATTCTAGAAGATTATTTGATGCTATGGAGAAAAGGAATCTGATTACATGGACAGCCATGATTCATTCATATATAGAAAATGGGTATTTGTATGAAGCACTTGATGTGATAAGGTCAATGCAATTGTCAAAGCATAGGCTAGACTCTGTTGCCATGGTAAGGATGTTGAGTGTTTGTGGTCAACTAAAACTCGTAAAGCTTGGGAAGGAGATTCATGGGCAGTTCTTGAAAAGGTACTTTGCATCTGTCCATTTCGTTTCCGCAGAACTTATCAATATGTATGGTTCTTTTGGAGACATTGATAAGGCAAAGTTGGTTTTTAATGCCGTTCCAGTTAAAGGTTCTATGACATGGACTGCTCTTATAAGGGCCTACGGATATAATGAATTGTATCAAGATGCAATTGACCTTTTTAATCAGATGATATCTTCTCCAAATCACTTAACTTTTGAAGCTGTTCTATCTATATGTGACAGAGCTGGATTTGTTGATGATGCTTGTAGAATCTTCAATTTGATGCCTAAATATAAAGTTGAAGCATCTAAGAGACACTTTGCCATTATGGTCCAACTACTTACACACTCTGGTCAACTGGAGAAAGCTCAGAGATTTGAACAAATGAGTTCTTTCTTATAG 2067 0.4194 MQNSVSSLSLGFPPNSTPNIFKVFNFKLSSQSPSPQSTQSPPKIHHRNLPRITTTSGKQRNKNKVKPFAEKDAFPCSLPLHTKNPIFIYKDIKRFARQNKLKEALTILDYVDQQGIPVNVTTFSSLIAACIRTKSLRKGREIHTHIRINGLEDNTFLRTKLVHMYTSCGSFEDAKKLFDELPCESVYPWNALLRGTVVSGKRKYIDVLKTFSEMRALGVELNVYSFSSVIKSFAGAPALFQGLKTHALLIKNGLLDNYIIRTSLIDMYSKCGKIKLARRMFEEIPERDVVVWGAMLAGFAHNRLQGKVLEYVRWMVEEGVELNSVIVTIVIPVIGEVCARRLGQEVHAYVLKTKSYSKQVPIQSALIDMYCKCGDMSSARRVFYSSRERNVVCWTALMSGYATNGKLEQALRSTIWMQQEGFRPDVVTVATVLPICAQLRALDQGKQIHAYALKHWFLPNVSVTSLMVMYSKCGVVEYSRRLFDAMEKRNLITWTAMIHSYIENGYLYEALDVIRSMQLSKHRLDSVAMVRMLSVCGQLKLVKLGKEIHGQFLKRYFASVHFVSAELINMYGSFGDIDKAKLVFNAVPVKGSMTWTALIRAYGYNELYQDAIDLFNQMISSPNHLTFEAVLSICDRAGFVDDACRIFNLMPKYKVEASKRHFAIMVQLLTHSGQLEKAQRFEQMSSFL* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2375 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Apr4g2375 688 Gene3D Tetratricopeptide repeat domain 87 241 IPR011990 GO:0005515
Apr4g2375 688 Gene3D Tetratricopeptide repeat domain 457 561 IPR011990 GO:0005515
Apr4g2375 688 MobiDBLite consensus disorder prediction 31 62 - -
Apr4g2375 688 Pfam Pentatricopeptide repeat domain 107 152 IPR002885 -
Apr4g2375 688 Pfam Pentatricopeptide repeat domain 185 234 IPR002885 -
Apr4g2375 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Apr4g2375 688 Pfam PPR repeat 461 490 IPR002885 -
Apr4g2375 688 Pfam PPR repeat 262 288 IPR002885 -
Apr4g2375 688 Pfam PPR repeat 492 518 IPR002885 -
Apr4g2375 688 Pfam PPR repeat 161 182 IPR002885 -
Apr4g2375 688 Pfam PPR repeat 594 620 IPR002885 -
Apr4g2375 688 TIGRFAM PPR: pentatricopeptide repeat domain 364 392 IPR002885 -
Apr4g2375 688 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Apr4g2375 688 TIGRFAM PPR: pentatricopeptide repeat domain 262 290 IPR002885 -
Apr4g2375 688 TIGRFAM PPR: pentatricopeptide repeat domain 594 620 IPR002885 -
Apr4g2375 688 Gene3D Tetratricopeptide repeat domain 340 452 IPR011990 GO:0005515
Apr4g2375 688 Gene3D Tetratricopeptide repeat domain 242 339 IPR011990 GO:0005515
Apr4g2375 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 621 IPR002885 -
Apr4g2375 688 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 47 681 - -
Apr4g2375 688 Pfam PPR repeat family 389 433 IPR002885 -
Apr4g2375 688 MobiDBLite consensus disorder prediction 31 63 - -
Apr4g2375 688 Gene3D Tetratricopeptide repeat domain 562 686 IPR011990 GO:0005515
Apr4g2375 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Apr4g2375 688 PANTHER OS07G0578800 PROTEIN-RELATED 47 681 IPR045215 GO:0003723|GO:0009451
Apr4g2375 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2375 Apr-Chr4 32647587 32649881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2375 75 681 Glycoside Hydrolase AT3G49170 26.752 7.04e-69 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2375 - - gmx:100809249 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0468 10 11463526 11465177 Apr4g2375 4 32647587 32649881 PCT