Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2240 ATGTCAGAAATTGACATGGCAGTTGTTAAACCTGAGATGATGAAGCCCTATATCTGGCTTCAGACTTCAGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCTCTGATTTGTCAAGAAATAATACAAACAGGCTTAGGATCTTCCAAGAATTGTGCAATATCTCTTCCTCAACGAGTCAGTCCTGCGATGTTGAGCTTAATCCTTGATTATTGTCGCTTTCATCAAGTACCAGGTCACTCAAACAAGGAACGGAAGTCTTTTGATGAGAAATTCATTAGGATGGACACAAAGCGGCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCACTGGTTGATCTTATGAGTCGAGCACTTGCTCGAATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAGATATTTCATCTGCCTGATGATCTTACTGAGGAAGAGAAATTGGAGCCCTTGAAAAACACAACTGACGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGGAAAGAACTACAAGAGCGCGGGAGGTTAAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATAATGGAGATCCAAAGGGGATTAAAACTTCCAAAAGTAAAAAGAAGAACAGAAGGAAAAAAGAGCAACAACAGAAGAGCTCTTCTTTGAAGGAAGCTTCTGAAGTGGAAGAGAAGGAAGTAAATGGTGAAAATATAAGACACCAAAGTGCTGAGGCTGATAGAATTGCTGAGGCCTCAAATTCACATGCAGAAGACACTTTTGATCATAAGGTGTTCGATGATGGAGATATAGATGATGGAATTGATCCTGCACTAAAGGAAAAAATTGACAGGGAAGTAGAAGATTTTGCACGTCGGTTGAATTCTGTCTGGCCAGAAAGGATGCAAGAAAGGAAGATAATGCATTTTACTCCCAATGGAAATGGTTTTCTAAGGCCAAATTCTCGATTGGACTCAGATTTGAAATGA 1044 0.4004 MSEIDMAVVKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPLICQEIIQTGLGSSKNCAISLPQRVSPAMLSLILDYCRFHQVPGHSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLMSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELQERGRLKNVEVEEEHVDERSVDDLLSFINGNNGDPKGIKTSKSKKKNRRKKEQQQKSSSLKEASEVEEKEVNGENIRHQSAEADRIAEASNSHAEDTFDHKVFDDGDIDDGIDPALKEKIDREVEDFARRLNSVWPERMQERKIMHFTPNGNGFLRPNSRLDSDLK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2240 347 MobiDBLite consensus disorder prediction 206 256 - -
Apr4g2240 347 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Apr4g2240 347 PANTHER SKP1-LIKE PROTEIN 20 1 277 - -
Apr4g2240 347 PANTHER SKP1 1 277 IPR016897 GO:0006511
Apr4g2240 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Apr4g2240 347 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Apr4g2240 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Apr4g2240 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Apr4g2240 347 Coils Coil 230 251 - -
Apr4g2240 347 MobiDBLite consensus disorder prediction 268 290 - -
Apr4g2240 347 MobiDBLite consensus disorder prediction 234 256 - -
Apr4g2240 347 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2240 Apr-Chr4 31415498 31425712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2240 - - gmx:100782740 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2240 4 31415498 31425712 Apr4g2240 4 31415498 31425712 ECH
Apr10g1324 10 25573381 25583494 Apr4g2240 4 31415498 31425712 ECH
Apr4g2240 4 31415498 31425712 Apr10g1324 10 25573381 25583494 PCT