Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1324 ATGTCAGAAATTGACTTGGCAGTTATTAAACCTGAGATGATGAAGCCCTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGATTTCATCAAGTACCAGGCCGCTCAAATAAGGAACGGAAGTCTTATGATGAGAGATTTGTTAGAATAGAAACAGAGAAGCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCATTGGTTGATCTTACCAGTCGCGCACTTGCTCGAATAATTGAAGGAAAAACGCCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCCTTGAGAAATATAACTGCTGATCCAAGGATCAGGCTTTTGAACCGTTTGTATGCTAAAAAGAGGAAGGAACTAAAAGAGCGTGAAAAGTTAAAGAATGTTGAAGTTGAAGAAGAGCATGTGGATGAACGTTCGCTTGATGACCTGTTATCTTTTATTAATGGAAATGATGGAGATCCAAAGGGGGTTAAAACTTCTAAGAATAAAAAGAAGAACCGGAAGAAAAAAGAGCAACAGAAGAACTCTTTGGCGGAAGCATCTGAACTGAACACAAAGGAGGTAAATGGTCATAATATCAGACACCAAAGTTCAGAAGCTGATAGAATTAGTGAGATCTCATATTTACACCATACAGAAGATGACAGTTTTACTCCTAAGGTTGAGTTAAATGATGGTGATATAGATGATGAGATTGGTCCTGCGTTAAAGGAAAAAATTGACAGACACCAAAGTTCCGAAGCTGATAGAATTAGTGAGACTTCATATTTACACCATTCAGAAGATTATGCTTTTACTTCTAAGTTTGACTTAAATGATGGATGTATAGATGATGAGATTGATCCTGCTCTAAAGGAAAAAATTGACCGACACCGAAGTTCAGAAGCTGATAGAATTAGTGAGATCTCTTATTTACACCATACAGAAGATGACAATATAGATGATGGGATTGATCCTGCTTTGAAGGAAAAAATTGATAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGTCCGGCCGAAGAGAATTCAAAAATTTTTACCGTCAGGGCAAGAAAGTAAAACAGTGCTTTTTACTACAGACCAGAGTGGTTTTCTAAGGCGACATGCTTGA 1302 0.3817 MSEIDLAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDERFVRIETEKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKEREKLKNVEVEEEHVDERSLDDLLSFINGNDGDPKGVKTSKNKKKNRKKKEQQKNSLAEASELNTKEVNGHNIRHQSSEADRISEISYLHHTEDDSFTPKVELNDGDIDDEIGPALKEKIDRHQSSEADRISETSYLHHSEDYAFTSKFDLNDGCIDDEIDPALKEKIDRHRSSEADRISEISYLHHTEDDNIDDGIDPALKEKIDREVEDFARRLNSVRPKRIQKFLPSGQESKTVLFTTDQSGFLRRHA* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1324 433 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Apr10g1324 433 SMART skp1_3 15 116 IPR001232 GO:0006511
Apr10g1324 433 SUPERFAMILY POZ domain 16 80 IPR011333 -
Apr10g1324 433 Coils Coil 170 190 - -
Apr10g1324 433 PANTHER SKP1 1 278 IPR016897 GO:0006511
Apr10g1324 433 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Apr10g1324 433 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Apr10g1324 433 Coils Coil 222 245 - -
Apr10g1324 433 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Apr10g1324 433 MobiDBLite consensus disorder prediction 206 259 - -
Apr10g1324 433 PANTHER SKP1-LIKE PROTEIN 20 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1324 Apr-Chr10 25573381 25583494 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1324 - - aprc:113848965 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1324 10 25573381 25583494 Apr10g1324 10 25573381 25583494 ECH
Apr10g1324 10 25573381 25583494 Apr4g2240 4 31415498 31425712 ECH
Apr4g2240 4 31415498 31425712 Apr10g1324 10 25573381 25583494 PCT