Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2239 ATGGTTTCGCTTGGAGCTTCATGTGTTGTGTGCTGTGTGTTCATGCTTCATGTCACTTTCAGTTTCGCTGGGGACATAGTACACCCTGATAATATTGCTCCTAAGAGGCCTGGTTGTGACAACAACTTTGTTCTGGTTAAAGTTCCAATTTGGATTGATGGTGTGGAAACCTGTGAGTATGTTGGTGTTGGTGCAAGATTTGGCCCCACTTTGGAATCGAAAGAAAAACGTGCTAATCATACTAGAGTTGCCATTGCGGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTGGTGAAGTCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTTTGTGAAGAGAACGAAACTGATATTGACATTAGAATACCTGCTGTCATGCTTCCACAAGATGCTGGAGAAAACCTGGAAAATCATATACTAAACAAGTCAATAGTCTCCGTGCAGTTGTACTCTCCACTGCGCCCAATGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCATCTTATTGGTCTGCATGGACTGCCAGAGAGGCTGCTGTTGAGCAGGAGAAGCTACTAAAGGATGCTTCAGATGAATATGTAAATACGGAGAATACTGGTTCCAGTGGTTATGTGGAAATCAGTACTGCAGCAGCAATTTCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTAATGGCATCGTGGTTTGTTGAAGTTCTGGTGGTTCTATTTTGTATTGGTGGGGTTGAGGGACTACAAACGTGCTTGGTGGCTCTGTTATCATGTTTCAGATGGTTTCAACATGCTGGACAATCATACGTGAAAATACCTTTCTTTGGTGCTGTATCATATCTTACGCTCGCTGTTACTCCCTTCTGCATAGTGTTTGCTGTGCTTTGGGGAGTTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGACATTCTTGGTATCACGTTGATAATTACAGTTCTTCAGATTGTCCGCATTCCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGTGCCTTTCTATATGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCACGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCCATGCTACTCAAGATACCCCGTTTGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGTGACATCATCTTACCAGGGCTTCTAGTTGCATTTTCGTTAAGGTATGATTGGTTGGCAAAGAAGAACCTTCGGGATGGATACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGTCTCCTTATCACATATGTGGCTTTGAACTTGATGGATGGGCATGGTCAACCAGCTTTGCTTTATATAGTCCCCTTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGTGAACTCAGGATTTTATGGACAAGAGGGGAACCAAAAATTACCTGCCCTCACATCCAAGAGGATCAATCAACGAATCAGTAA 1617 0.4273 MVSLGASCVVCCVFMLHVTFSFAGDIVHPDNIAPKRPGCDNNFVLVKVPIWIDGVETCEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINYRTELFKMVCEENETDIDIRIPAVMLPQDAGENLENHILNKSIVSVQLYSPLRPMVDVAEVFLWLMAVGTILCASYWSAWTAREAAVEQEKLLKDASDEYVNTENTGSSGYVEISTAAAISFVVIASCFLVMLYKLMASWFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHAGQSYVKIPFFGAVSYLTLAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELRILWTRGEPKITCPHIQEDQSTNQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2239 538 Pfam PA domain 89 166 IPR003137 -
Apr4g2239 538 SUPERFAMILY PA domain 98 137 IPR046450 -
Apr4g2239 538 SMART psh_8 242 511 IPR006639 GO:0004190|GO:0016021
Apr4g2239 538 Coils Coil 218 238 - -
Apr4g2239 538 PANTHER SIGNAL PEPTIDE PEPTIDASE 7 535 IPR007369 GO:0004190|GO:0016021
Apr4g2239 538 Pfam Signal peptide peptidase 243 522 IPR007369 GO:0004190|GO:0016021
Apr4g2239 538 Gene3D - 52 183 - -
Apr4g2239 538 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 7 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2239 Apr-Chr4 31409545 31417266 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2239 K09597 - gmx:100808921 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2239 4 31409545 31417266 Apr4g2239 4 31409545 31417266 ECH
Apr4g2239 4 31409545 31417266 Apr10g1325 10 25584316 25593658 PCT