Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2143 ATGATGAGTGCAAAGTCAAGCTTTTTGTTGTGCGTTTCGTTTTTGGTGTTGGGGTGTTGTTTGGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAAAGTCACTTCACCCAAATCGTTGAAGGGTACATATGAATGTGCAATTGGGAATTTTGGGGTCCCAAAGTACGGAGGAACATTGGTTGGCTCTGTGGTGTACCCAAAGGTGAATCAAAAGGGATGCAGAAACTTCAGTGATGTTGATGTTTCGTTTCAGTCCAAGCCCGGAAGTTTTCCCACATTTCTTCTAGTTGATCGAGGAGATTGTTACTTCACTTTGAAGGCGTGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGTCAGAAACATTGATCACCATGGACACTCCTGAAGAAGGGAATGGTTCAAATGATGGTTATGTGGAAAAGATTATTATTCCTTCTGCTCTTATCAGCAAATCTGTGGGGGATAAAATCAAGGAGGCTCTCTCTAATGGAGAGATGGTTAACATAAATCTTGATTGGAGAGAGGCACTTCCGCATCCCGATGATAGAGTCGAGTATGAGTTATGGACAAATAGCAATGATCAGTGTGGTCCAAAGTGTGACAATCAAATTGATTTTCTGAAGAGCTTTAAAGGTGCAGCTCAACTACTTGAGCAGAAAGGGTTCAGTCAGTTTACCCCTCACTATATAACTTGGTATTGCCCTGAAGCATTTCTCTTGAGCAAACAGTGCAAGTCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCAGATCCTGAACAAGACTTCAATAGCGGGTATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGATTACGTGACTGACTTTTCAATTCGTTGCCCCATGAAAGAGAAAAAGTACACAGAAGAATGCTCTGATCAAGTTATTAAATCTCTTGGTGTTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCTCATGCAAATGTTGACAATCCTGTTCTTAAGGCTGAACAGGAAGCACAGATTGGCAAAGGCACTCGTGGCGATGTTACTATACTGCCTACTCTTGTTATAAACAACGGACAGTATAGAGGTAAATTGTCAAGACCTGCTGTTCTTAAGGCAATATGTGCAGGTTTCCTAGAGACCACTGAACCATCAATTTGCTTAACTCCAGACATGGAAACAAATGAGTGTTTGGTGAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTGCAAAATGTGAAGTTTCTTGGCGATGGATATACCCACTGCGAAGCTTCAGAATCCTTGAGGTGTGAAATCAACAATGGTGGTTGTTGGAAGGGAGCCCAACGTGGCAGGGTTTACTCTGCCTGTATTGATGACCAAAAAAAGGGTTGTACATGTCCACCTGGGTTCAGAGGGGATGGAGTCCAGTCATGTGAAGATATTGATGAGTGCCAAGAGAAATTGGCCTGTCGGTGCCCAGATTGCAAATGCAAAAACACCTGGGGGAGTTATGAGTGCAAATGCAGTAGGGGTATGATCTACTCGCAAGACAATGACGTGTGTTTTGGTTCATATACTTCTTCAGTAAACATCTGGATGGTTATCCTCGTTGTGGTGGTTGCTGTTTCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCCGAGATTCGTGCAATAATGGCTCAATACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCGTCATGATGTATAG 1866 0.4271 MMSAKSSFLLCVSFLVLGCCLGRFVVEKNSLKVTSPKSLKGTYECAIGNFGVPKYGGTLVGSVVYPKVNQKGCRNFSDVDVSFQSKPGSFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKSETLITMDTPEEGNGSNDGYVEKIIIPSALISKSVGDKIKEALSNGEMVNINLDWREALPHPDDRVEYELWTNSNDQCGPKCDNQIDFLKSFKGAAQLLEQKGFSQFTPHYITWYCPEAFLLSKQCKSQCINNGRYCAPDPEQDFNSGYDGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMKEKKYTEECSDQVIKSLGVDLKKIKDCVGDPHANVDNPVLKAEQEAQIGKGTRGDVTILPTLVINNGQYRGKLSRPAVLKAICAGFLETTEPSICLTPDMETNECLVNNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFLGDGYTHCEASESLRCEINNGGCWKGAQRGRVYSACIDDQKKGCTCPPGFRGDGVQSCEDIDECQEKLACRCPDCKCKNTWGSYECKCSRGMIYSQDNDVCFGSYTSSVNIWMVILVVVVAVSGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEVSNQVRHDV* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2143 621 SUPERFAMILY PA domain 93 169 IPR046450 -
Apr4g2143 621 Pfam Complement Clr-like EGF-like 500 519 IPR026823 -
Apr4g2143 621 Pfam PA domain 61 163 IPR003137 -
Apr4g2143 621 CDD EGF_CA 516 547 - -
Apr4g2143 621 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 12 600 - -
Apr4g2143 621 Gene3D Laminin 470 554 - -
Apr4g2143 621 Gene3D - 22 186 - -
Apr4g2143 621 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Apr4g2143 621 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 600 - -
Apr4g2143 621 ProSitePatterns Calcium-binding EGF-like domain signature. 516 542 IPR018097 GO:0005509
Apr4g2143 621 SMART egfca_6 516 558 IPR001881 GO:0005509
Apr4g2143 621 Gene3D Laminin 410 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2143 Apr-Chr4 30527132 30533446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2143 9 621 Miscellaneous Gene Families AT3G52850 70.161 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2143 - - gmx:100807514 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2143 4 30527132 30533446 Apr4g2143 4 30527132 30533446 ECH
Apr4g2143 4 30527132 30533446 Apr10g0553 10 12672012 12677246 PCT