Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0553 ATGAGGACAAAGCTAAGTCTTTTGTGGTGTGTTTGGATCTTGCTTTGTGGGTCTAGTGTGGGAAGGTTTGTGGTGGAGAAGAACAATTTGAAAATCACTTCTCCAAAATCATTGAGAGGTATATATGAATGTGCAATTGGGAATTTTGGGGTCCCCAAGTATGGAGGAACCATGATTGGCAGTGTGGTGTATCCCAAGTCGAATCAGAATGGATGTAACAGATTTGATACCTCGTTGAGTTCCAAACCCGGAACCTTCCCCACCTTTGTTCTCGTTGATCGGGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAGAATGGTGGAGCTGCAGCTATTCTTGTTGCAGATGATAGGATGGAGCCATTGATCACCATGGACACTCCTGAAGAAGGGAATGCTGCTAAAGACGATGATTATATTGAAAAGATAAGCATTCCTTCTGCCCTTATAAGCAAATCACTAGGGGAGAGCATCAAGAGAGCTCTTTCTAGTGGGTCAATGGTTAATGTAAATCTTGATTGGAGAGAGGCTCTTCCACACCCTGATGAAAGAGTTGAGTATGAGTTTTGGACTAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATCAATTTTGTCAAGAGTTTTAAAGGGGCAGCTCAATTACTTGAGAAGAAAGGGTTCACTAAATTTACCCCTCACTATATAACTTGGTATTGCCCAGAAGCATTTATATTGAGCCAACAGTGCAAGTCCCAGTGCATAAACAATGGCAGGTACTGTGCACCAGATCCTGAGCAAGATTTCAGCAGAGGGTACAATGGTAGAGATGTTGTTATTCAGAACTTGCGTCAAGCTTGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGATTATGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAAGTACTCTGAAGAATGCTCAGATCAAGTTATTAAGTCTCTTGCTGTTGATTTGAAGAAGGTTAAAGACTGTGTTGGGAATCCTAATGCAGATGTTGAAAACCCTGTTCTTAATGCTGAACAGGATGCTCAGATTGGCAAGGACAATCGTGGTGACGTTACTATACTACCTACTCTTATAATAAACAACAGACAATATAGAGGTAAGTTGTCAAGAGCAGCGGTACTCAAGGCTCTCTGTTCAGGTTTCCAAGAGACCACTGAGCCATCAATTTGTTTAACTCCAGACATGGAAACAAATGAGTGTTTGCAAAACAATGGTGGTTGTTGGCAGGACAAAGCTGCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGGGTATGTGAATGTCCTATTGTACAGAATGTTCGGTTTGTTGGTGATGGATACACCCACTGTGAAGCTACAGGCGCCTTGAGGTGTGCAGTCAACAATGGAGGTTGTTGGAAGGAGACTCAAGGTGGCAGGGCTTACTCTGCTTGTATTGATAATCACACAAAAGGTTGCAAGTGCCCACCTGGATTCAGGGGTGATGGAGTCCACTCCTGCGAAGATGTGGATGAGTGCAACGAGAAATTGGCCTGCCAGTGCCCAGAGTGTCAATGCAAAAATACCTGGGGAAGTTATGAATGCAAGTGTAGCAATGGTTTGTTCTACACACGAGAAAATGACTTATGTATTGGTAAATATGCCGCCTCGGTGGCCAGCGGGGGCATTTTCTGGCTTGTTATTCTGGTCATTGCTATTGTTGGTGCTGGGGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCTGAGATAAGGGCAATTATGGCACAATACATGCCCTTGGATAATCAACCGGAGATCTCTAGTCAAGCTCATCCTGATGTCTAG 1869 0.435 MRTKLSLLWCVWILLCGSSVGRFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGSVVYPKSNQNGCNRFDTSLSSKPGTFPTFVLVDRGDCYFTLKAWNAQNGGAAAILVADDRMEPLITMDTPEEGNAAKDDDYIEKISIPSALISKSLGESIKRALSSGSMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKSFKGAAQLLEKKGFTKFTPHYITWYCPEAFILSQQCKSQCINNGRYCAPDPEQDFSRGYNGRDVVIQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMRENKYSEECSDQVIKSLAVDLKKVKDCVGNPNADVENPVLNAEQDAQIGKDNRGDVTILPTLIINNRQYRGKLSRAAVLKALCSGFQETTEPSICLTPDMETNECLQNNGGCWQDKAANITACRDTFRGRVCECPIVQNVRFVGDGYTHCEATGALRCAVNNGGCWKETQGGRAYSACIDNHTKGCKCPPGFRGDGVHSCEDVDECNEKLACQCPECQCKNTWGSYECKCSNGLFYTRENDLCIGKYAASVASGGIFWLVILVIAIVGAGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEISSQAHPDV* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0553 622 Gene3D - 20 183 - -
Apr10g0553 622 Gene3D Laminin 407 452 - -
Apr10g0553 622 Pfam PA domain 60 160 IPR003137 -
Apr10g0553 622 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 601 - -
Apr10g0553 622 SUPERFAMILY PA domain 89 170 IPR046450 -
Apr10g0553 622 SMART egfca_6 513 555 IPR001881 GO:0005509
Apr10g0553 622 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Apr10g0553 622 Gene3D Laminin 467 551 - -
Apr10g0553 622 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 11 601 - -
Apr10g0553 622 CDD EGF_CA 513 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0553 Apr-Chr10 12672012 12677246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0553 4 622 Miscellaneous Gene Families AT3G52850 70.032 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0553 - - gmx:100815266 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0553 10 12672012 12677246 Apr10g0553 10 12672012 12677246 ECH
Apr4g2143 4 30527132 30533446 Apr10g0553 10 12672012 12677246 PCT