Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2117 ATGGCTAGAGTCCTCAAAATGGCATGCATGGTTGTTATGTGCATGGCAGTGGTGGGTGCACCAATAATGATGGTGGAAGCTATGACGTGTAGTGATGTAGTTCAGACTTTAATGCCATGCCTATCTTACTTGACGCAAGGTGGAAACCCTTCGCAAGAGTGCTGTGACGGTGTGAGAACCCTTCAGGCCAACGCCGCCACAACCTCTGACCGCCAAACCGTGTGCAACTGTCTTAAGAGTAATGTTAATAACTTTGGCGTCAATGCTAATTACGCTCAGGCACTCCCAGCTCAATGCCATGTCAACATCCCTTATGCCATCAGTCCTTCTACCAATTGTGATGACATCAGGTTCTGA 357 0.479 MARVLKMACMVVMCMAVVGAPIMMVEAMTCSDVVQTLMPCLSYLTQGGNPSQECCDGVRTLQANAATTSDRQTVCNCLKSNVNNFGVNANYAQALPAQCHVNIPYAISPSTNCDDIRF* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2117 118 PANTHER - 3 114 IPR000528 GO:0006869|GO:0008289
Apr4g2117 118 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1-RELATED 3 114 - -
Apr4g2117 118 Pfam Protease inhibitor/seed storage/LTP family 30 113 IPR016140 -
Apr4g2117 118 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Apr4g2117 118 CDD nsLTP1 29 114 - -
Apr4g2117 118 SMART aai_6 30 113 IPR016140 -
Apr4g2117 118 Gene3D - 27 118 IPR036312 -
Apr4g2117 118 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 115 IPR036312 -
Apr4g2117 118 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Apr4g2117 118 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Apr4g2117 118 PRINTS Plant phospholipid transfer protein signature 70 85 IPR000528 GO:0006869|GO:0008289
Apr4g2117 118 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Apr4g2117 118 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2117 Apr-Chr4 30175335 30176635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2117 1 117 Acyl Lipid Metabolism Gene Families AT2G38530 48.739 1.27e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2117 - - pvu:PHAVU_008G087100g 147.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2117 4 30175335 30176635 Apr10g0827 10 20514487 20515815 PCT