Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2104 ATGATTGTAATGTCTGAGAAACCCCTTCAGGGAGTTCCTCCACAGGTCACAGACCCCACTTTTCCTCCTTCATCTAAAAGGTTGGAAGGAAAAATTGCTATAGTTACTGGGGGTGCTAGAGGCATTGGTGAAGCAACAGTGAGAGTTTTTGTGAAGCATGGTGCGAAGGTGGTGATTGCTGATATAGAGGATGCAGCTGGAGCGATGCTTGCAGAGACACTATCTCCTTCAGCTACCTTTGTCCACTGTGATGTTAGCTTGGAAAAAGAGGTTGAGAACTTGGTTAGTTCCACAGTCTCACGCTACGGACAACTTGACATCATGTTCAACAATGCAGGGGTGCTAGGGAACCAATCTAAGAACAAGAGCATTGTGAATTTTAACCCTGATGAATTTGACCAAGTCATGTGTGTGAATGTGAAGGGAGTGGCATTAGGGATGAAGCATGCAGCTAGAGTGATGATTCCTAGAGGAATTGGATGCATAATATCCACTTCTAGTGTAGCTGGACTCATGGGGGGGCTTGGACCACATGCTTATACCGCTTCAAAGCATGCAATTGTTGGGCTCACTAAGAACACTGCTTGCGAATTGGGAAGGTATGGGATAAGGGTCAATTGCATTTCTCCATTTGGGGTTGCCACTTCCATGCTTGTGAATGCATGGAGGCACAGTGATGAAGAGGTTGGTGATGAGTGCATCAATTTTGGGTTCCCTCTCCCAGAGGAGGTGGAGAAAATGGAGGAGTTTGTTCGAGGGCTTGCCAACTTAAAAGGAACTACTTTAAGGCCTAAAGACATTGCTGAGGCCGCACTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGTGGCCATAATCTTGTTGTGGATGGTGGAGTCACTTCCTTAAAAAATTGTATTGGACTGTAA 909 0.4521 MIVMSEKPLQGVPPQVTDPTFPPSSKRLEGKIAIVTGGARGIGEATVRVFVKHGAKVVIADIEDAAGAMLAETLSPSATFVHCDVSLEKEVENLVSSTVSRYGQLDIMFNNAGVLGNQSKNKSIVNFNPDEFDQVMCVNVKGVALGMKHAARVMIPRGIGCIISTSSVAGLMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATSMLVNAWRHSDEEVGDECINFGFPLPEEVEKMEEFVRGLANLKGTTLRPKDIAEAALYLASDESKYVSGHNLVVDGGVTSLKNCIGL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2104 302 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 23 302 - -
Apr4g2104 302 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 23 302 - -
Apr4g2104 302 MobiDBLite consensus disorder prediction 1 23 - -
Apr4g2104 302 Gene3D - 21 300 - -
Apr4g2104 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 IPR002347 -
Apr4g2104 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Apr4g2104 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 IPR002347 -
Apr4g2104 302 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Apr4g2104 302 PRINTS Glucose/ribitol dehydrogenase family signature 103 114 IPR002347 -
Apr4g2104 302 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Apr4g2104 302 PRINTS Glucose/ribitol dehydrogenase family signature 180 199 IPR002347 -
Apr4g2104 302 PRINTS Glucose/ribitol dehydrogenase family signature 201 218 IPR002347 -
Apr4g2104 302 PRINTS Glucose/ribitol dehydrogenase family signature 257 277 IPR002347 -
Apr4g2104 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 294 IPR036291 -
Apr4g2104 302 Pfam short chain dehydrogenase 31 222 IPR002347 -
Apr4g2104 302 Pfam Enoyl-(Acyl carrier protein) reductase 244 294 - -
Apr4g2104 302 CDD secoisolariciresinol-DH_like_SDR_c 27 294 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2104 Apr-Chr4 29928483 29930059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2104 12 293 Acyl Lipid Metabolism Gene Families AT1G24360 26.897 2.81e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2104 - - gmx:100775210 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2104 4 29928483 29930059 Apr4g2104 4 29928483 29930059 ECH
Apr10g0817 10 20267055 20268499 Apr4g2104 4 29928483 29930059 PCT