Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0817 ATGGTTGCAGCTGAAGTCATGCCTGAGAAACCACTTCAAGCAGTTCCCATCCTTCCAAGAGAAAGCAGTTTTTCATCTTCATCTAGAAGGTTGGAAGGCAAGGTTGCAATTGTAACTGGGGGTGCCAGAGGAATTGGAGAAGCAACGGTGCGAGTTTTTGTGAAGAACGGGGCAAAAGTGGTGATTGGTGATGTTGAGGATGCACTTGGAACCATGCTTGCTGAGTCTTTAGCACCTTCAGTGACCTATGTGCACTGTGATGTTAGTATAGAAGAAGAGGTTGAAAACTTGGTGAGTTACACGGTTTCTCGCTATGGACAACTTGACATAATGTTCAACAATGCTGGGGTGCTTGGGAACCAATCAAAGAACAAGAGTATTACAAACTTTGACCCTGAAGAGTTTGACCGAGTCATGCGTGTGAATGTGAAAGGAATGGCCTTGGGAATCAAACATGCGGCTAGGCTGATGATTCCTAGAGGAATTGGGTGCATTATTTCCACTGCTAGTGTTGCTGGGGTCATGGGTGGGCTTGGCCCACATGCTTACACTGCTTCAAAGCATGCCATAGTTGGGCTCACAAAAAACACTGCTTGTGAGTTAGGGAGGTATGGGATAAGGGTCAATTGCATTTCACCATTTGGGGTGGCCACTTCCATGCTTGTGAATGCTTGGAGAACAAGTGATGATGGTGATGATGATGGGGACATCAATTTTGGGTTGCATTTCCAAGACGAAGCGGAGAAAATGGAGGGGTTTGTTAGGGGGCTTGCCAATTTGAAAGGAACTACTTTAAGGGCCAAAGATGTTGCTGAGGCTGCACTTTATCTTGCTAGTGATGAGTCCAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGTGGAGTCACCTCCTCAAGAAATTGCATTGGCTTGTGA 918 0.4575 MVAAEVMPEKPLQAVPILPRESSFSSSSRRLEGKVAIVTGGARGIGEATVRVFVKNGAKVVIGDVEDALGTMLAESLAPSVTYVHCDVSIEEEVENLVSYTVSRYGQLDIMFNNAGVLGNQSKNKSITNFDPEEFDRVMRVNVKGMALGIKHAARLMIPRGIGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATSMLVNAWRTSDDGDDDGDINFGLHFQDEAEKMEGFVRGLANLKGTTLRAKDVAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0817 305 Gene3D - 21 303 - -
Apr10g0817 305 Pfam Enoyl-(Acyl carrier protein) reductase 247 297 - -
Apr10g0817 305 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 4 305 - -
Apr10g0817 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 297 IPR036291 -
Apr10g0817 305 CDD secoisolariciresinol-DH_like_SDR_c 30 297 IPR045309 GO:0016616
Apr10g0817 305 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 4 305 - -
Apr10g0817 305 Pfam short chain dehydrogenase 34 225 IPR002347 -
Apr10g0817 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Apr10g0817 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Apr10g0817 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Apr10g0817 305 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Apr10g0817 305 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Apr10g0817 305 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Apr10g0817 305 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Apr10g0817 305 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Apr10g0817 305 PRINTS Glucose/ribitol dehydrogenase family signature 260 280 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0817 Apr-Chr10 20267055 20268499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0817 31 297 Acyl Lipid Metabolism Gene Families AT1G63380 31.295 4.17e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0817 - - gmx:100790562 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0817 10 20267055 20268499 Apr10g0817 10 20267055 20268499 ECH
Apr10g0817 10 20267055 20268499 Apr4g2104 4 29928483 29930059 PCT