Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2091 ATGAATGAAAGACAATCCCTTCAGGGCCTCCCTCATGGTTTATTTGGGAAAGAAAAGAAGGGCACAATCACCACCTTGATGGAAGCCACCCCTTCCTTCAAACAAGACACCTACTTGGTTTCCCACCTCAAGTCTTCAGAGAAGAAAGCACTGCAAGAGCTCAAGGAAAAGCTTCAAGCTTCTTCTGACACAAAAAGCCATGCTTTTTCCATGTGGGGTGTTCATTTACTTGGTGATGATGAGAGTGCTAATGTGTTACTATTGAAGTTCCTGAGAGCCAGGGACTTCAGGGTCAACGATGCTCTCAAAATGCTTCTCAAGTGCTTGTCTTGGAGGTCAAAGTTTGGTGCTGACAACGTTGTGGATGAAGACTTGGGATTCAAGGAGCTTGAAGGGGTAGTGGCTTACACTCATGGGTGTGATAGAGAGGGACACCCTGTGTGCTACGATGCTTATGGAGTGTTCAAAGACAAGGACATATATGAGAAAGTTTTTGGAAATGAAGAGAAGCTAAACAAGTTCTTGAGGTGGAGGGTTCAAGTTCTAGAGAGAAGCATTAAGCTTCTTCATTTCAAGCCTTGTGGGGTTAATTCTCTTATTCAGGTCACTGACCTAAAGGACATGCCCAAGAGAGAGCTTAGAGTTGCTTCCAATCACATTCTCTCTTTGTTTCAAGACAACTATCCTGAAATGGTGGCTCGTAAGATTTTCATCAATGTGCCTTGGTACTTCAGCATGTTGTACTCAATGTTCAGTCCATTTCTGACCCAAAGGACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGCAATGTTGCAGAGACACTGTACAAATTTATAAGGCCCGAGGCTATTCCTGTTGTGTATGGTGGACTGAGTCGACCCAGCGATTTGCAAAATGGTCCCCCAAAACCTGCTTCTGAGTTCACAGTTAAAGGGGGAGAGAAAGTGAACATACAAATAGAAGGAATTGAGAGTGGTGCAACTATAACGTGGGACATTGTGGTGGGAGGGTGGGACTTGGAATACAGTGCTGAGTTTGTCCCAATTGCACAAGGAAGCTACATTATAGCAGTTGAGAAGGCAAGGAAGATTGAGGCCTCAGAAGAAGCAATCCATAACTCATTCACGTCAAAAGAAGCTGGCAAATTGGTACTATCTGTTGATAACTCTTCCTCAAGGAAGAAAAAAGTTGCTGCTTATTGCTATGTTGTCCGAAAAAGCATTGAAGTGCATTTAAGTCCCAAATAA 1248 0.4343 MNERQSLQGLPHGLFGKEKKGTITTLMEATPSFKQDTYLVSHLKSSEKKALQELKEKLQASSDTKSHAFSMWGVHLLGDDESANVLLLKFLRARDFRVNDALKMLLKCLSWRSKFGADNVVDEDLGFKELEGVVAYTHGCDREGHPVCYDAYGVFKDKDIYEKVFGNEEKLNKFLRWRVQVLERSIKLLHFKPCGVNSLIQVTDLKDMPKRELRVASNHILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFIRPEAIPVVYGGLSRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIESGATITWDIVVGGWDLEYSAEFVPIAQGSYIIAVEKARKIEASEEAIHNSFTSKEAGKLVLSVDNSSSRKKKVAAYCYVVRKSIEVHLSPK* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2091 415 ProSiteProfiles GOLD domain profile. 272 410 IPR009038 -
Apr4g2091 415 PANTHER PATELLIN-6 18 408 - -
Apr4g2091 415 Coils Coil 44 64 - -
Apr4g2091 415 Gene3D GOLD domain 302 404 - -
Apr4g2091 415 Gene3D - 120 301 IPR036865 -
Apr4g2091 415 SUPERFAMILY CRAL/TRIO domain 128 293 IPR036865 -
Apr4g2091 415 CDD SEC14 127 291 IPR001251 -
Apr4g2091 415 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 123 296 IPR001251 -
Apr4g2091 415 SMART CRAL_TRIO_N_2 83 108 IPR011074 -
Apr4g2091 415 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 307 404 IPR036598 -
Apr4g2091 415 Pfam CRAL/TRIO domain 131 290 IPR001251 -
Apr4g2091 415 PANTHER PATELLIN-1 18 408 IPR044834 GO:0008289
Apr4g2091 415 Gene3D - 39 114 - -
Apr4g2091 415 Pfam CRAL/TRIO, N-terminal domain 50 106 IPR011074 -
Apr4g2091 415 SUPERFAMILY CRAL/TRIO N-terminal domain 39 123 IPR036273 -
Apr4g2091 415 SMART sec14_4 129 293 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2091 Apr-Chr4 29785798 29788382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2091 87 285 Acyl Lipid Metabolism Gene Families AT1G55840 30.622 2.29e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2091 - - gmx:100814996 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2091 4 29785798 29788382 Apr4g2091 4 29785798 29788382 ECH
Apr4g2091 4 29785798 29788382 Apr10g0805 10 20058525 20061597 PCT