Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2021 ATGCCTATTTCCAATTCCATGTCCACCAGGGAGGAGAGAGAGAGAGCCACACTGTCATGGCGCCAAATCCCCAACCTCAAATACGACGTCGTTCACCCCAACCCTCACCACCGTCTCCGCCACAACGCCACCCTCACTTTCTCCGCCACCCCCGCCGCCGACTGTAAATTTGCCTCCGTCTCAGTGGCTGAAGCCAAACTACATCACGATTTCATGCCTACGCCGTCCCAACTCCTCAAGCACCCCCTCGCCGCCTTCGCCATCGTTCCCCGAGACGCCGCCCTCTTCACCGCCGGAGCCATCGCCGGCGCCGCCGCCAAGACCGTCACTGCGCCGCTCGACCGTATCAAGCTCCTCATGCAGACTCATGGCGTGCGGGTTGGGCAAGATAGTGCTAAGAAGGCAATGGGTTTCATTGAGGCCATAACACTTATAGGGAAAGAAGAAGGCATTCAAGGTTACTGGAAGGGCAACCTCCCCCAGGTGATTCGGGTCATACCTTATAGTGCTGTCCAGCTTTTTGCTTATGAAATTTATAAGAAAATATTCAGGGGAGAGAATGGCGAGCTCTCTGTTGTGGGAAGACTTGCAGCAGGTGCTTTTGCTGGCATGACATCCACTTTTATAACGTACCCATTAGATGTTCTGAGATTACGATTAGCTGTTGAACCTGGTTATCGAACCATGTCGGAGGTTGCCTTGAGCATGCTAAGGGAGGAAGGCTTTGCATCTTTCTACAATGGCCTGGGGCCTTCTCTTATTGCAATAGCCCCTTATATTGCAGTGAACTTTTGTGTTTTTGACTTACTAAAGAAGTCATTGCCTGAGAAATATCAAAAGAGAACTGAGACATCTATACTCACAGCCGTGCTTTCAGCATCTCTGGCTACCCTTACCTGCTATCCTTTGGACACTGTGCGAAGACAGATGCAATTGAAGGGCACACCTTATAAGACAGTATTAGATGCTCTTTCAGGTATTGTGGCACGAGATGGAGTTACTGGTTTGTATCGAGGATTTGTGCCCAATGCTCTTAAATCCCTACCTAACAGCAGCATCAAACTTACCACTTATGACATTGTTAAGCGCCTAATTGCAGCTAGTGAGAAAGAATTTCAAACAATTGCGGAGGAAAACCGGAACAAACAAAAGAACATTAACAACCAATGA 1170 0.4915 MPISNSMSTREERERATLSWRQIPNLKYDVVHPNPHHRLRHNATLTFSATPAADCKFASVSVAEAKLHHDFMPTPSQLLKHPLAAFAIVPRDAALFTAGAIAGAAAKTVTAPLDRIKLLMQTHGVRVGQDSAKKAMGFIEAITLIGKEEGIQGYWKGNLPQVIRVIPYSAVQLFAYEIYKKIFRGENGELSVVGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGYRTMSEVALSMLREEGFASFYNGLGPSLIAIAPYIAVNFCVFDLLKKSLPEKYQKRTETSILTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDALSGIVARDGVTGLYRGFVPNALKSLPNSSIKLTTYDIVKRLIAASEKEFQTIAEENRNKQKNINNQ* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2021 389 Gene3D Mitochondrial carrier domain 93 374 IPR023395 -
Apr4g2021 389 PANTHER SOLUTE CARRIER FAMILY 25 14 378 - -
Apr4g2021 389 PANTHER ADP/ATP CARRIER PROTEIN 14 378 - -
Apr4g2021 389 PRINTS Mitochondrial carrier protein signature 95 108 IPR002067 GO:0055085
Apr4g2021 389 PRINTS Mitochondrial carrier protein signature 108 122 IPR002067 GO:0055085
Apr4g2021 389 PRINTS Mitochondrial carrier protein signature 157 177 IPR002067 GO:0055085
Apr4g2021 389 PRINTS Mitochondrial carrier protein signature 205 223 IPR002067 GO:0055085
Apr4g2021 389 PRINTS Mitochondrial carrier protein signature 246 264 IPR002067 GO:0055085
Apr4g2021 389 PRINTS Mitochondrial carrier protein signature 289 311 IPR002067 GO:0055085
Apr4g2021 389 Coils Coil 365 385 - -
Apr4g2021 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 182 IPR018108 -
Apr4g2021 389 Pfam Mitochondrial carrier protein 189 276 IPR018108 -
Apr4g2021 389 Pfam Mitochondrial carrier protein 95 185 IPR018108 -
Apr4g2021 389 Pfam Mitochondrial carrier protein 285 366 IPR018108 -
Apr4g2021 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 280 364 IPR018108 -
Apr4g2021 389 SUPERFAMILY Mitochondrial carrier 94 360 IPR023395 -
Apr4g2021 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 273 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2021 Apr-Chr4 28914302 28918783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2021 57 382 Organic Solute Cotransporters AT5G01500 80.061 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2021 K14684 - gmx:100778912 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2021 4 28914302 28918783 Apr4g2021 4 28914302 28918783 ECH
Apr4g2021 4 28914302 28918783 Apr10g0645 10 15364232 15368509 PCT