Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0645 ATGGAAGCGCGTTTGGGACAGAGAGCCCTCAACACTGATAGTGGCGCCGCCAAGTGTTTTTCCATGGCGCAGAATAGAGAGCAACTCGGAACGCTGCATCAGCTTCTGGCTGGTGGCATCGCTGGTGCCTTTAGCAAAACCTGCACCGCCCCCCTTGCGCGCCTCACTATTCTTTTTCAGGTGCAAGGTATGCATTCTGATGTGGCAGCATTGAGCAAGCCAAGCATATGGCGTGAGGCGTCACGTATTGTCAGTGAAGAAGGGTTAAGAGCATTTTGGAAAGGCAATATGGTGACCATTGCTCATCGTCTCCCATATTCTGCTGTCAACTTCTATGCCTATGAACGCTACAAGAATGTGTTATCTTCTTTGATGGCGGAGAATCTTAGTGGAAATTCAAGTGCAAACCCCTTGGTGCACTTTGTGGGTGGTGGCTTGGCAGGTATTACAGCTGCTTCTGCCACATATCCTTTGGATCTTGTAAGAACACGACTTGCAGCGCAGAGAAGTTTAATGTACTACAGGGGCATCTCACATGCTTTCAGTACAATCTGCAAAGAAGAAGGTTTTTTGGGTCTGTATAAGGGACTTGGAGCGACATTGTTGGGTGTTGGACCCTGTATAGCTATAAGTTTTTCTGCTTATGAGTTGCTACGTTCTTTATGGCACTCACAAAGGCCTGATGATTCTACTGCCGTGGTTGGTCTTGCCTGTGGCAGTCTTTCAGGAATTGCATCATCAACAGCAACATTTCCTTTGGATCTTGTAAGGCGTAGGATGCAGTTAGAAGGTGCTGGTGGCCGAGCTCGTGTCTATAACACTGGCTTGTTTGGGGCATTTGGGCACATAATTCAAAATGAAGGGGTACGAGGTTTGTACAGAGGCATTCTGCCCGAGTACTACAAGGTTGTTCCCGGAGTGGGCATTGCCTTTATGACTTATGAAACATTGAAGATGCTACTATCAGGCAGTCCAAGTTATTAG 984 0.4746 MEARLGQRALNTDSGAAKCFSMAQNREQLGTLHQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDVAALSKPSIWREASRIVSEEGLRAFWKGNMVTIAHRLPYSAVNFYAYERYKNVLSSLMAENLSGNSSANPLVHFVGGGLAGITAASATYPLDLVRTRLAAQRSLMYYRGISHAFSTICKEEGFLGLYKGLGATLLGVGPCIAISFSAYELLRSLWHSQRPDDSTAVVGLACGSLSGIASSTATFPLDLVRRRMQLEGAGGRARVYNTGLFGAFGHIIQNEGVRGLYRGILPEYYKVVPGVGIAFMTYETLKMLLSGSPSY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0645 327 Gene3D Mitochondrial carrier domain 24 323 IPR023395 -
Apr10g0645 327 Pfam Mitochondrial carrier protein 28 122 IPR018108 -
Apr10g0645 327 Pfam Mitochondrial carrier protein 231 322 IPR018108 -
Apr10g0645 327 Pfam Mitochondrial carrier protein 135 223 IPR018108 -
Apr10g0645 327 SUPERFAMILY Mitochondrial carrier 28 317 IPR023395 -
Apr10g0645 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 221 IPR018108 -
Apr10g0645 327 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 21 325 - -
Apr10g0645 327 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Apr10g0645 327 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Apr10g0645 327 PRINTS Mitochondrial carrier protein signature 95 115 IPR002067 GO:0055085
Apr10g0645 327 PRINTS Mitochondrial carrier protein signature 150 168 IPR002067 GO:0055085
Apr10g0645 327 PRINTS Mitochondrial carrier protein signature 194 212 IPR002067 GO:0055085
Apr10g0645 327 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Apr10g0645 327 PANTHER SOLUTE CARRIER FAMILY 25 21 325 - -
Apr10g0645 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 320 IPR018108 -
Apr10g0645 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 120 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0645 Apr-Chr10 15364232 15368509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0645 1 326 Organic Solute Cotransporters AT2G37890 66.269 1.89e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0645 - K14684 gmx:100777563 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0645 10 15364232 15368509 Apr10g0645 10 15364232 15368509 ECH
Apr4g2021 4 28914302 28918783 Apr10g0645 10 15364232 15368509 PCT